Conserved Protein Domain Family
cobB

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TIGR00379: cobB 
cobyrinic acid a,c-diamide synthase
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Statistics
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PSSM-Id: 273044
Aligned: 4 rows
Threshold Bit Score: 755.487
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O28054  10 RVVIAGTSSKVGKTMISIGLMRLLVNRgyEVQPYKVGPDFIDPGFHHLATGRYSRNLDSFMLSRSAILETFIRNFRGA-- 87  Archaeoglobus fulgidu...
O27509   2 RVVLAGTGSAVGKTTIATGIMKALSGR--GVQPFKVGPDYIDPSYHTMATGNTSRNIDSFFMTEAQIREAFTRAMKLSgs 79  Methanothermobacter t...
Q58816   5 RVVIAGTSSEVGKTVISTGIMKALSKKy-NVQGYKVGPDYIDPTYHTIATGNKSRNLDSFFMNKEQIKYLFQKHSKDK-- 81  Methanocaldococcus ja...
P73002   2 TVIIAGERSGAGKTTITLAMLAYLARQklRVQSFKVGPDYIDPMFHSQITGRPCRNLDPFLTSEAYVQRCFHYHSQGT-- 79  Synechocystis sp. PCC...
O28054  88 DVAIIEGKTGLYDSS--DAVSEKGSVAEVSKILKAPVVLVANVERLNRTAAAIILGYKLFDPDVLLKGVILNRVGSERHA 165 Archaeoglobus fulgidu...
O27509  80 RMGIIEGVRGLYEGI--SPIGDTGSTASVAKALDAPVVLIINSRSLVKSAAAMVLGFRSLDREVKIEGVILNQVKNRRHY 157 Methanothermobacter t...
Q58816  82 DISVIEGVRGLYEGI--SAIDDIGSTASVAKALDSPIILLVNAKSLTRSAIAIIKGFMSFD-NVKIKGVIFNFVRSENHI 158 Methanocaldococcus ja...
P73002  80 PYSLIEGVMGLFDGVpyQGLTDYSSTAHIARLLNLPIVFVMDCQRLSGSVAAIVQGYRHWQPGVNLVGVILNRVGGDRHL 159 Synechocystis sp. PCC...
O28054 166 GKVRTAVEKLA-GVRVLGVVPRK-KVKMPYRHLGLVTAYER--EDMDELLDNiAEIVEKHVDVDKILEIAEKAPPLDSVF 241 Archaeoglobus fulgidu...
O27509 158 LKTRRAVEELT-GTAVIGGIPRSsELEVEQRHLGLVPAVERd-TIAAQIEKW-GLAMEEYIDLEALQDIMSSAGKIRGER 234 Methanothermobacter t...
Q58816 159 KKLKDAMSYYLpDIEIIGFIPRNeDFKVEGRHLGLVPTPENlkEIESKIVLW-GELVEKYLDLDKIVEIADEDFEEVDD- 236 Methanocaldococcus ja...
P73002 160 ELLKIALEPLR--IPILGVFFRQqDLTLPDRHLGLVPCGEL--PQIQQYFDQlAHVAAQQLDWPKLLPLLETPRNLPSPM 235 Synechocystis sp. PCC...
O28054 242 EDEKEDEEKKYVKIGVIRDQVFSFYYQDNLDELSKYA-ELVFVNSLTDKRLP-DVDALYIGGGFPEVFAEGLEKNEKLRN 319 Archaeoglobus fulgidu...
O27509 235 QPLWQRGNRKRVRIGVAIDEAFNFYYQENIEALEDNAaSVVPFSPIHDEELP-DVDAVYIGGGYPEIFAAELESNTSMRK 313 Methanothermobacter t...
Q58816 237 VFLWEV-NENYKKIAVAYDKAFNFYYWDNFEALKENKaKIEFFSPLKDSEVP-DADILYIGGGYPELFKEELSRNKEMIE 314 Methanocaldococcus ja...
P73002 236 SLFDVPQKSPQARLAIAQDQAFNFYYADNLDLLTHCGfELIPFSPLEDTELPpAIDGVYLGGGFPELFAEQLSQNQALKD 315 Synechocystis sp. PCC...
O28054 320 EIYDFCQSGNPVYAECGGLMYLGESLETSEGef-emVGFLPLKTKMYERFQAQGYSVYRTLKPCIIAKRNQKIVGHEFHY 398 Archaeoglobus fulgidu...
O27509 314 SIQRFHADGRPIFGECGGLMYLMSSIDEREM-----CGVFPHPAEMTGRVQGLSYVIAEAVMDNLITEAGDKFRGHEFHY 388 Methanothermobacter t...
Q58816 315 SIKEFDG---YIYGECGGLMYITKSIDNVPM-----VGLLNCSAVMTKHVQGLSYVKAEFLEDCLIGRKGLKFKGHEFHY 386 Methanocaldococcus ja...
P73002 316 QLKTLIHQGLPTYGECGGLMYLSQSLTNFEGqifpmLEMLPTAVTMGGKL-SLGYRQAQVVNSHSWLWQTESLRGHEFHR 394 Synechocystis sp. PCC...
O28054 399 SRPTLTGKADFAFRVERGFGIDGR--RDGILKENTLGCYIHVHFLS----DKSIARRFVKKAMK 456 Archaeoglobus fulgidus DSM 4304
O27509 389 SRVLGASGGKFAFRVLRGRGIVDS--LDGITSGSSLASYIHIHAAS----CPQFAANFTRNAWE 446 Methanothermobacter thermautotrophicu...
Q58816 387 SKLVNIKEERFAYKIERGRGIINN--LDGIFNGKVLAGYLHNHAVA----NPYFASSMVNFGE- 443 Methanocaldococcus jannaschii DSM 2661
P73002 395 SQMTKLPN-QALYR-QRGLLAIDQntTDGWCVGSVQASYLHLHWGSqistVEKFRAACLAFQKK 456 Synechocystis sp. PCC 6803 substr. Ka...
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