2JI1


Conserved Protein Domain Family
dfx_rbo

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TIGR00320: dfx_rbo 
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desulfoferrodoxin
The short N-terminal domain contains four conserved Cys for binding of a ferric iron atom, and is homologous to the small protein desulforedoxin; this domain may also be responsible for dimerization. The remainder of the molecule binds a ferrous iron atom and is similar to neelaredoxin, a monomeric blue non-heme iron protein. The homolog from Treponema pallidum scores between the trusted cutoff for orthology and the noise cutoff. Although essentially a full length homolog, it lacks three of the four Cys residues in the N-terminal domain; the domain may have lost ferric binding ability but may have some conserved structural role such as dimerization, or some new function. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough. [Energy metabolism, Electron transport]
Statistics
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PSSM-Id: 273011
Aligned: 5 rows
Threshold Bit Score: 222.419
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2JI1_A     1 MPERLQVYKCEVCGNIVEVLNGGIGELVCCNQDMKLMSENTVDAAKEKHVPVIEKIDGGYKVKVGAVAHPMEEKHYIQWI 80  Desulfarculus baars...
O26851     1 MTETNQIFRCNVCGNIVEVLNPGAGQLVCCNQPMELLVARRTDVGPEKHVPVVEETGTGIRVKVGEVPHPMEENHHIQWI 80  Methanothermobacter...
CAA67880   1 MPERLQVYKCEVCGNIVEVLNGGIGELVCCNQDMKLMSENTVDAAKEKHVPVIEKIDGGYKVKVGAVAHPMEEKHYIQWI 80  Desulfarculus baars...
AAA23380   1 MPNQYEIYKCIHCGNIVEVLHAGGGDLVCCGEPMKLMKEGTSDGAKEKHVPVIEKTANGYKVTVGSVAHPMEEKHWIEWI 80  Desulfovibrio vulga...
O29425     1 MTEVMQVYKCMVCGNIVEVVHAGRGQLVCCGQPMKLMEVKTTDEGKEKHVPVIEREGNKVYVKVGSVAHPMEEQHYIEWI 80  Archaeoglobus fulgi...
2JI1_A    81 ELLADDKCYTQFLKPGQAPEAVFLI-EAAKVVAREYCNIHGHWkA 124 Desulfarculus baarsii DSM 2075
O26851    81 EVIAGDMVYRKDLNPGDNPEAEFPVeMASDFMVRIYCNIHGLW-Y 124 Methanothermobacter thermautotrophicus str. Delta H
CAA67880  81 ELLADDKCYTQFLKPGQAPEAVFLI-EAAKVVAREYCNIHGHWkA 124 Desulfarculus baarsii DSM 2075
AAA23380  81 ELVADGVSYKKFLKPGDAPEAEFCI-KADKVVAREYCNLHGHWkA 124 Desulfovibrio vulgaris str. Hildenborough
O29425    81 EVIDDGCVHRKQLKPGDEPKAEFTV-MSDRVSARAYCNIHGLWqS 124 Archaeoglobus fulgidus DSM 4304
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