1AKO,3W2X


Conserved Protein Domain Family
exoDNase_III

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TIGR00195: exoDNase_III 
Click on image for an interactive view with Cn3D
exodeoxyribonuclease III
The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 272954
Aligned: 9 rows
Threshold Bit Score: 390.976
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1AKO_A         1 MKFVSFNINGLRARPHQL--EAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ--KGHYGVALLTKETPIAV 76  Escherichia col...
P44318         1 MKFISFNINGLRARPHQL--EAIIEKYQPDVIGLQEIKVADEAFPYEITENLGYHVFHHGQ--KGHYGVALLTKQEPKVI 76  Haemophilus inf...
P37454         1 MKLISWNVNGLRAVMRKMdfLSYLKEEDADIICLQETKIQDGQVDLQP---EDYHVYWNYAvkKGYSGTAVFSKQEPLQV 77  Bacillus subtil...
P09030         1 MKFVSFNINGLRARPHQL--EAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ--KGHYGVALLTKETPIAV 76  Escherichia col...
WP_010873218  11 MDIASWNVNSVRSRQQHI--LDWLGTNPVDVLCLQETKVVDEDFPRQPFEEAGYHCHISGQ--KSYNGVAIFSREPLQDV 86  Synechocystis s...
WP_010878084   2 LKIATFNVNSIRSRLHIV--IPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSGS--KGRNGVAIASLEEPEDV 77  Archaeoglobus f...
WP_000767556   1 MKLISWNVNGLRACMTKGf-MDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWNCAikKGYSGVVTFTKKEPLSV 76  Helicobacter py...
WP_002656039   1 MKLISWNVNGIRAVLKKGf-LEFVKEYTPDILCIQETKALREQLPKDL-ILENYYSYFSNSkiKGYSGVCIYSKVEPISV 78  Lyme disease sp...
3W2X_A         7 LKIISWNVNGLRAVHRKGf-LKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAerKGYSGVAMYTKVPPSSL 85  Methanothermoba...
1AKO_A        77 RRGFPGDDE-------EAQRRIIMAEIPSLLgnvtVINGYFPQGeSRDHPIKFPAKAQFYQNLQNYLETELKRDNP-VLI 148 Escherichia col...
P44318        77 RRGFPTDNE-------DAQKRIIMADLETEFglltVINGYFPQGeSRAHETKFPAKEKFYADLQQYLEKEHDKSNP-ILI 148 Haemophilus inf...
P37454        78 IYGIGVEEH-------DQEGRVITLEFENVF----VMTVYTPN--SRRGLERIDYRMQWEEALLSYILELDQK-KP-VIL 142 Bacillus subtil...
P09030        77 RRGFPGDDE-------EAQRRIIMAEIPSLLgnvtVINGYFPQGeSRDHPIKFPAKAQFYQNLQNYLETELKRDNP-VLI 148 Escherichia col...
WP_010873218  87 KIGFAALVEpaltgdlDEQKRVISGVYDGVR----IVNLYVPNG-SALDSEKYLYKLRWLNLLQTYLEQLRRSDTPeFLV 161 Synechocystis s...
WP_010878084  78 SFGLDSEPK-------D-EDRLIRAKIAGID----VINTYVPQG-FKIDSEKYQYKLQWLERLYHYLQKTVDFRSF-AVW 143 Archaeoglobus f...
WP_000767556  77 SYGINMEEH-------DKEGRVITCEFESFY----LVNVYTPN--SQQALSRLSYRMSWEVEFKKFLKALELK-KP-VIV 141 Helicobacter py...
WP_002656039  79 RL-LGEEIF-------DNEGRGLVACYDDFI----LVNGYFPN--SQVLRRRLGYKLDFLSYVENLADSLVCDGKN-VVI 143 Lyme disease sp...
3W2X_A        86 REGFGVERF-------DTEGRIQIADFDDFL----LYNIYFPN--GKMSEERLKYKLEFYDAFLEDVNRERDSGRN-VII 151 Methanothermoba...
1AKO_A       149 MGDMNISPTDLDIGIGEENRKrwlRTGkcsFLPEEREWMDRLMSWG-LVDTFRHANPQ-TaDRFSWFDYRSK-GFDDNRG 225 Escherichia col...
P44318       149 MGDMNISPSDLDIGIGDENRKrwlRTGkcsFLPEERAWYQRLYDYG-LEDSFRKLNPTaN-DKFSWFDYRSK-GFDDNRG 225 Haemophilus inf...
P37454       143 CGDLNVAHQEIDLKNPKANRN---NAG---FSDQEREAFTRFLEAG-FVDSFRHVYPDlE-GAYSWWSYRAG-ARDRNIG 213 Bacillus subtil...
P09030       149 MGDMNISPTDLDIGIGEENRKrwlRTGkcsFLPEEREWMDRLMSWG-LVDTFRHANPQtA-DRFSWFDYRSK-GFDDNRG 225 Escherichia col...
WP_010873218 162 CGDFNIAPEDRDIHDPVGREN---HIM---ATAMEREALTEVLAIAnLQDAFRKFTEE-T-GHYSWWDYRTR-GFSRNRG 232 Synechocystis s...
WP_010878084 144 CGDMNVAPEPIDVHSPDKLKN---HVC---FHEDARRAYKKILELG-FVDVLRKIHPN-E-RIYTFYDYRVKgAIERGLG 214 Archaeoglobus f...
WP_000767556 142 CGDLNVAHNEIDLENPKTNRK---NAG---FSDEEREKFSELLNAG-FIDTFRYFYPNkE-KAYTWWSYMQQ-ARDKNIG 212 Helicobacter py...
WP_002656039 144 CGDFNIAHTEIDLISPDSNRD---SPG---YYIEETTWLDDFLNKG-YVDTFRIFNKD-P-GYYTWWSYRTR-ARERNMG 213 Lyme disease sp...
3W2X_A       152 CGDFNTAHREIDLARPKENSN---VSG---FLPVERAWIDKFIENG-YVDTFRMFNSD-P-GQYTWWSYRTR-ARERNVG 221 Methanothermoba...
1AKO_A       226 LRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATF 266 Escherichia coli K-12
P44318       226 LRIDHILVSQKLAERCVDVGIALDIRAMEKPSDHAPIWAEF 266 Haemophilus influenzae Rd KW20
P37454       214 WRIDYFVVSESLKEQIEDASISADVMGS----DHCPVELII 250 Bacillus subtilis subsp. subtilis str. 168
P09030       226 LRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATF 266 Escherichia coli K-12
WP_010873218 233 WRIDHHYLTPQLYDQAQKCWIDREPRGWEKPSDHAPVVVTI 273 Synechocystis sp. PCC 6803
WP_010878084 215 WRVDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVF 255 Archaeoglobus fulgidus
WP_000767556 213 WRIDYFLCSNPLKTRLKDALIYKDILG----SDHCPVGLEL 249 Helicobacter pylori
WP_002656039 214 WRIDYFIVNEFFKRNVEKSLILDKVMGS----DHCPVFLEL 250 Lyme disease spirochete
3W2X_A       222 WRLDYFFVNEEFKGKVKRSWILSDVMGS----DHCPIGLEI 258 Methanothermobacter thermautotrophicus str. Delta H
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