1I8D


Conserved Protein Domain Family
ribE

?
TIGR00187: ribE 
Click on image for an interactive view with Cn3D
riboflavin synthase, alpha subunit
This protein family consists almost entirely of two lumazine-binding domains, described in the family Lum_binding from Pfam. The model generates lower scores against other proteins that also have two lumazine-binding domains, including some involved in bioluminescence.The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]
Statistics
?
PSSM-Id: 272950
Aligned: 7 rows
Threshold Bit Score: 271.216
Created: 7-Oct-2014
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1I8D_A         1 MFTGIVQGTAKLVSIDEKPNF------RTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLG 74  Escherichia coli
P29015         1 MFTGIVQGTAKLVSIDEKPNF------RTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLG 74  Escherichia coli
P45273         1 MFTGIVQGTAPIHSIKEKANF------RTQVVKLLPEMRKDLEIGASIANNGVCLTVTEINGDLVSFDLMQETLKITNLG 74  Haemophilus inf...
P16440         1 MFTGIIEETGTIESMKKAGHA------MALTIKCS-KILEDVHLGDSIAVNGICLTVTDFTKNQFTVDVMPETVKATSLN 73  Bacillus subtil...
P38145         1 MFTGIVECMGTVLENNPYDDSesggqgVSITIGNAGSILTDCHVGDSIAVNGVCLTVTEFNNDSFKVGISPETIKRSNVA 80  Saccharomyces c...
WP_010873257   1 MFTGIIQSLGYLSAQRADRLE------ISLSPNDAQRVLGDMALGDSIAVDGVCLTVEAIAHQGFFADVSPETLQRTTLG 74  Synechocystis s...
WP_000491029   1 MFSGLIHQIAKVKSFHNNILN------IESDLNPK--------LGDSIAINGACLTAIESSKTHFSVELSQKTQNSVALE 66  Helicobacter py...
1I8D_A        75 DLKVG-DWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQ-------LMKYILYKGFIGIDGIS 146 Escherichia coli
P29015        75 DLKVG-DWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQ-------LMKYILYKGFIGIDGIS 146 Escherichia coli
P45273        75 TVKVG-DYVNIERAMQMGTEIGGHLLSGHIYCTAKISDIIASENNRQIWFELPSAD-------VMKYILTKGFVAVDGIS 146 Haemophilus inf...
P16440        74 DLTKG-SKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNAVYYDLKM-DPS-------LTKTLVLKGSITVDGVS 144 Bacillus subtil...
P38145        81 SWIQG-TQVNLERAVSQDVRFGGHYVQGHVDTVANIVSRRPEGNSIIFGFQLRDQE-------YFKYIVEKGFICIDGTS 152 Saccharomyces c...
WP_010873257  75 RAKERrTAVNIETSLRVGGKVGGHFVSGHVDGVGQLLSNEQINNAWLLSFGSVGSLqkqwqeyLAPYLVPKGSIAVNGIS 154 Synechocystis s...
WP_000491029  67 NYKDL---VHIEPALKADASLDGHFVQGHIDAIGVIEKIIHNANQVDFFISA-SEE-------TLLLCVEQGSIAVDGVS 135 Helicobacter py...
1I8D_A       147 LTVGEVTPTRFC----VHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVL 199 Escherichia coli
P29015       147 LTVGEVTPTRFC----VHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVL 199 Escherichia coli
P45273       147 LTIGEVRDTQFC----VNLIPETLQRTLMGRRKVGDIVNIEIDPQTQAIVDTVENYL 199 Haemophilus influenzae Rd KW20
P16440       145 LTIFGLTEDTVT----ISLIPHTISETIFSEKTIGSKVNIECDMIGKYMYRFLHKAN 197 Bacillus subtilis subsp. subtilis str....
P38145       153 LTIIKVDPLSQGgafyISMIKHTQDNVIMPLKKIGDEVNIEVDLTGKIIEKQILLTL 209 Saccharomyces cerevisiae S288c
WP_010873257 155 LTVADCGEDWFN----VAVIPHTYSETNLQLLQPGDWVNLEGDILGKYAARFLSRGR 207 Synechocystis sp. PCC 6803
WP_000491029 136 LTLSKVEEKGFW----LTIIPYTLENTLFKAYKLKRRVNIETDMLVRSVASILKKTK 188 Helicobacter pylori
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap