1GZ0


Conserved Protein Domain Family
rRNA_methyl_3

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TIGR00186: rRNA_methyl_3 
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rRNA methylase, putative, group 3
this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Statistics
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PSSM-Id: 129290
View PSSM: TIGR00186
Aligned: 11 rows
Threshold Bit Score: 266.902
Threshold Setting Gi: 447072063
Created: 7-Oct-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1GZ0_A        12 SEXIYGIHAVQALLERAperfQEVFILKGREDK-RLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKP---- 86  Escherichia coli
P74328       123 LDLLYGHHAVLAALDGDrq-lNRIWITSHLRHDiRYRTKIQTAKANGTVVDEVDNFRLNQITHNANHQGIAAQVAP---- 197 Synechocystis s...
Q06753         5 HDYVIGKNAVIETLKSDrk-lYKLWMAENTVKG-QAQQVIELAKKQGITIQYVPRKKLDQMVT-GQHQGVVAQVAA---- 77  Bacillus subtil...
P39290         2 SEMIYGIHAVQALLERAperfQEVFILKGREDK-RLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKP---- 76  Escherichia coli
P44906         2 SEQIYGIHAVNSILTHSperlIEVFVLKGREDK-RLQPLLNELYSLGIGVQFVNRQTLDKKADGEVHQGVIARVQA---- 76  Haemophilus inf...
O30272         1 -MRLTDVNSIKEALLEG----KVVRIYHSGERNpKISEILEIARKKGVPIYRKDG------------ERFSAEVSP---- 59  Archaeoglobus f...
P75424         7 TSFLFGSKAFLEALDNQ------LQIKKVNLSD-KHQKLLGLIKKRGLRYEMHSSQWFHQQFRHINHQEFVCVINPn--- 76  Mycoplasma pneu...
P47494         7 QSCLFGVKAFEEAINNQ------VHIKLVNISI-RHKKLIPLIEAKKINFQIHSTNWFNNQYRDINHQELVAVLDTn--- 76  Mycoplasma geni...
O51468         1 -----------------------MNFIYQKKSP-KTKEIEQLAKTQNIKIIRINTNELDKILKNKDHRGFALKLKLeknk 56  Borrelia burgdo...
WP_001149319   2 QAVIYGKQVIMHLLNSH-----QEKLQEIYLSKeIDKKLFFALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELp--- 73  Helicobacter py...
P25270       123 FEYVYGTNSVYAALLNP----SRNCHSRLLYHGtIPSKFLQIVDELKVTTELVDKHRLNLLTNYGVHNNIALETKPlqpv 198 Saccharomyces c...
1GZ0_A        87 ----------------GRQYQEND-------LPDLIASLD-QPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSA 142 Escherichia coli
P74328       198 ----------------YHYWELGD-------LIDKAKSQStAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVA 254 Synechocystis s...
Q06753        78 ----------------YEYAELDD-------LYKAAEEKNeQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAV 134 Bacillus subtil...
P39290        77 ----------------GRQYQEND-------LPDLIASLD-QPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSA 132 Escherichia coli
P44906        77 ----------------AKELNEND-------LDEILANKQ-NPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSA 132 Haemophilus inf...
O30272        60 ----------------IKYADFEF-------IVKKALTGG--SFILFLDNVVDQRNIGACIRTAEFFGAAGVVLPKRRVG 114 Archaeoglobus f...
P75424        77 ----------------QMLKTIEQ-------LIQITDSKS-TSTLVMLHEIQDPHNFGAILRTCMAAEVDGIIFKKHNQA 132 Mycoplasma pneu...
P47494        77 ----------------QLLIPLDQ-------LVKVVENKK-CSTLVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQV 132 Mycoplasma geni...
O51468        57 -------------nvkTQTKDFEN-------LLETFKKKE-NAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSA 115 Borrelia burgdo...
WP_001149319  74 -----------------LAVSLKE-------VK---KAQK----LLVLCGITDVGNIGGIFRSAYCLGMGGVILDFAKEL 122 Helicobacter py...
P25270       199 eiaylgdmdtssaalsIHELGFNNeniphelPYGTKTDAKkFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCS 278 Saccharomyces c...
1GZ0_A       143 QLNATAKKVACGAAESVPLIRVTNLARTXRXLQE-ENIWIVGTAGEADHT--LYQSKXTG------------RLALVXGA 207 Escherichia coli
P74328       255 GITSTVMKVAAGALEHFPVARVVNLSRALETLKE-SGFWIYGTVAGKQTA--LHQADLRE------------PMGLVIGS 319 Synechocystis s...
Q06753       135 GLTTTVAKASTGAIEHIPVARVTNLARTLEEMKE-RGIWVVGTDASARED--FRNMDGNM------------PLALVIGS 199 Bacillus subtil...
P39290       133 QLNATAKKVACGAAESVPLIRVTNLARTMRMLQE-ENIWIVGTAGEADHT--LYQSKMTG------------RLALVMGA 197 Escherichia coli
P44906       133 QLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQnHNIWVVGTAGEATET--IYQSKLTG------------PLALVMGA 198 Haemophilus inf...
O30272       115 SIQEGAVKASAGAVFHIPIARVENFASAIKKLKK-LGFTTLAADLDGEDL---EAVSLLL------------PAAVVIGG 178 Archaeoglobus f...
P75424       133 PINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQK-HGFWTVATTLDERLKpkDYRQVDFD------------KRILLVGN 199 Mycoplasma pneu...
P47494       133 PINNTVMKTSMGSVFYQNLVQVANLSYTITKLKE-IGFWTVVSTLDPIWKpiDYRKVDFA------------KKILIVGN 199 Mycoplasma geni...
O51468       116 KDNSTVLRTSSGASQYVKKMTVTNINNTINLLKN-YGFWIYTGDIKGQDI--NKIKINDK------------KIALILGN 180 Borrelia burgdo...
WP_001149319 123 AY-EGIVRSSLGLMYDLPFSVMPNTLDLINELKT-SGFLCLGASMQGSSQ---IENLSLK------------KCALFLGS 185 Helicobacter py...
P25270       279 PLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQE-MGGWTFITSHLANATseKYTVGKTIsmhdlnglcnelPVVLVVGN 357 Saccharomyces c...
1GZ0_A       208 EGEGXRRLTREHCDELISIPXAGS----------VSSLNVSVATGICLFEAVRQR 252 Escherichia coli
P74328       320 EGEGLSLLTQKHCDHLITIPLAGK----------TPSLNASVAAAISLYEIFRQR 364 Synechocystis sp. PCC 6803 substr. Kazusa
Q06753       200 EGKGMGRLVKEKCDFLIKLPMAGK----------VTSLNASVAAGLLMYEVYRKR 244 Bacillus subtilis subsp. subtilis str. 168
P39290       198 EGEGMRRLTREHCDELISIPMAGS----------VSSLNVSVATGICLFEAVRQR 242 Escherichia coli
P44906       199 EGEGMRRLTREHCDQLISIPMAGS----------VSSLNVSVATGVCLFEIVRQR 243 Haemophilus influenzae Rd KW20
O30272       179 EDRGVSRPVKKQCDFVVKIPGVGK----------VNSLNLSVAAGIFLYTLSRQK 223 Archaeoglobus fulgidus DSM 4304
P75424       200 EDKGLNALLLKNADLKVKIPMNPK----------LNSLNVSVAVGIILFGWKS-- 242 Mycoplasma pneumoniae M129
P47494       200 EDRGVNQLITKNADCRIKIPMNNK----------INSLNVSVALGIILFAWKN-- 242 Mycoplasma genitalium G37
O51468       181 EGKGVHKLIKENSDFLIRIPTSGK----------IDSLNVSVSTGILIFEIKRQL 225 Borrelia burgdorferi B31
WP_001149319 186 EHEGLSKKILAKMDTILSVKMRRD----------FDSLNVSVAAGILMDKIN--- 227 Helicobacter pylori
P25270       358 ESQGVRTNLKMRSDFFVEIPFGGIekgnrapepiVDSLNVSVATALLIDNILTCK 412 Saccharomyces cerevisiae S288c
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