Conserved Protein Domain Family
pepF

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TIGR00181: pepF 
oligoendopeptidase F
This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (, with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis. [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Statistics
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PSSM-Id: 272947
Aligned: 13 rows
Threshold Bit Score: 663.232
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAB95137       8 REDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFHhTYAt---tLNS-IEQINTALAELENILIALDRLSNYAELRLS 83  Staphylococcus ...
AAS44496      11 RADVPTELTWDLSDLYESDKEWETALRVLTDDIKKLD-AFKg---qLHTsPTTLLHCLLLEEELLMKLTKLYSYANLKES 86  Bacillus cereus...
O51264         4 RNEINENDKWDLSFLFANEEEYVKTINAIEIKTKEFKkYEK-----LELnFDLFKETLNKYYEIMEDLEKVSYYAMLQLE 78  Borrelia burgdo...
AAS13156      26 RSEIAKSDKWNIELLFKNEEEWEAALASIPEGGKEILkYKEafskpETIdAATLLACLKASTGVDRIAEKVGNYAFLQKS 105 Treponema denti...
O31605        74 RSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSkYKGk----LADsADHLYEALTYQDKVMERLGRLYTYAHMRSD 149 Bacillus subtil...
AAL95083       4 RKSIDKKYKWNLNDIYENYDIWESDLEKFEKLTKEVPkFKGe----IKKsPKKFVELEILMEKIAKLLDRLYLYPYMLKD 79  Fusobacterium n...
CAE76879       3 RPEALKEYKWDFDYLYKNQDEWKKDLDYLVEISKEFKnFKN-----KLHqKETFLKCLDLDEKVNFITNKLSTYTKMG-D 76  Mycoplasma myco...
P47429         1 --MKN-SYKWDLSVLLNNQSLQANFLKIQTVSEALIKaYNNg---lCFTnKTSFEQFLAIDDKFTELENRYTNYLYNKQN 74  Mycoplasma geni...
Q98QP0        11 YSDVPKEYRFDLDYLLEGKTIDQLFDQFLEKSKKLIKiKDS-----KYQnIESYLESLKLEEDFNLLNNKIINYISNNIS 85  Mycoplasma pulm...
WP_010888264  10 RAEVPREQTWDIEALYATPAAWEAEADALSTDIAGLGaSAGt----LGEsPEGLLAYLKAADDLEQRLTRFMSYAGMSAS 85  Deinococcus rad...
WP_000435570   6 RSEFPEKELWDLTALYQDREDFLRAIEKAREDINQFSrDYKg----NLHtFEDFEKAFAELEQIYIQMSHIGNYGFMPQT 81  Streptococcus p...
WP_006688433   2 NDINDKKYDWDIDSLLKGKKLDILFNEFVESNNELIKaFEK-----WINsLNDFINFHEVSEKNLLISNRINNYVSNKLQ 76  Ureaplasma parvum
WP_006688614   1 --MENKKYEWDLDDLLNNKSLDDLYAEFEEKKAKYIKaFPT-----FLDsKQNFAQWQILEEEFTIVANRFYNYVSNNLN 73  Ureaplasma parvum
BAB95137      84 VDTSNIEAQVLSAKLSTTYGKIVSQLSFVESEILELPE----EILQQLe----ESCPYQHYIKQLIKQKPFQLSASVEQV 155 Staphylococcus ...
AAS44496      87 TDRTNPVVQANSSKISALWTKVHTALSFIHNEILSLEEgtieKYLTQEt----KLEPFRKSLLDILQKRQHTLSPETEEA 162 Bacillus cereus...
O51264        79 TDVTNKDSNKIYSICVNLATKVSNTTSYFMPKILKTDEkkiqAWINDP-----ELKDKKIAIEKILREKKHILSEQEEKI 153 Borrelia burgdo...
AAS13156     106 SNEGDPENIKRISKYMMTVTELSAATSWLMPAIMEIPEekirSWIDPSsptgkDFADFKVSLEKTLYLKPHTLSDKEEKI 185 Treponema denti...
O31605       150 QDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEdklqQFILEKe----ELKLYSHAIEEITKERPHVLSEKEEAL 225 Bacillus subtil...
AAL95083      80 LDSTDEITSIKMQEIEMIYSKFATETAWISPEMLEIPEetmnEWIKKYp----ELQERKFGLSEMYRLRKHVLSEDKEQL 155 Fusobacterium n...
CAE76879      77 TNQADEVYRTLEAWLMNVLQDIEIETSFISPETKKIGFetisKWLKETk----DYQRYLYGYKKFFEQTKHILSEHDEEL 152 Mycoplasma myco...
P47429        75 ENNLDKEVNDAIFAYQSFKNNHNLAFSTLQQELYNHEKli-kDYLTDP-----KLAVYKRNLMLVFRDKPHQLSSQTQSL 148 Mycoplasma geni...
Q98QP0        86 VNVVDSHFREISQKFEFMYYSFFNQIGDENQRILEHEEki-tKWLLDP-----RLASYKKALDFVFKSKKHRLSKEVEDY 159 Mycoplasma pulm...
WP_010888264  86 VDGRDAVAAARRDRASGIGAQYGSAAAFALPELLELDEaqlrGWLERe-----DFADFRIALERLLRDKPHVRSAEVEEL 160 Deinococcus rad...
WP_000435570  82 TDYSNDEFANIAQAGMEFETDASVALTFFDDALVAADE----EVLDRLg----KLPHLTAAIRQAKIKKAHYLGADVEKA 153 Streptococcus p...
WP_006688433  77 TNLIDNEMLAWSQKIEHEQHRVAKIFINFENLAIKNKDli-nSYLKNSs-----LIKYQLEYEELWRYEKHILNEQQQKV 150 Ureaplasma parvum
WP_006688614  74 TNVVDPKWNSWSQKLSASFYELETALSNYNSVVLANEAki-kEYLTDS-----QLNVYTRKYNEIFRYQPHTLNNEQSKL 147 Ureaplasma parvum
BAB95137     156 LATLSPTLNSPYDLYGTTKMLDITFDSFEHD-GTTYPVDYATFENDYED---NKEPEFRRKSFKSFSDGIRKYQHTTAAT 231 Staphylococcus ...
AAS44496     163 LAALGEVHSSPYKIYGMTKLADMDFNSIQDEqGNELPVSFALFESKYEF---SPSVDIRRKAYSSFVSTLKRYKNTVATT 239 Bacillus cereus...
O51264       154 LANYTPLYTSYQSIFSALTNADMEFGEINKHp-----LTNSTYTLFLQ----NEDQKIRKEAFLRFYQKYKNNENTLANL 224 Borrelia burgdo...
AAS13156     186 LSLLSEPHGTPSQAFSVLTNVDFDFGTITTKeGDIK-LTQSSYSKFMQ----NPDRALREKAYKQLYGVYGAHKNTIASL 260 Treponema denti...
O31605       226 LAEASEVLGSSSNTFSVLNNADITFPSIKDEdGNEKQITHGNFINFLE----SENREVRKNAFDAVYKTYGQYKNTMATT 301 Bacillus subtil...
AAL95083     156 LSHFAQFMGSSSDIYAELSISDIKWNTVKFStGEEIPVSNGVYSKILAT---NRNQEDRKLAFEALYKSYENSKNTFAAI 232 Fusobacterium n...
CAE76879     153 LSKISKGYTAISGMYDTLAYADRQEETINYKg-IDQVLTNSLFLEILQDsdpIKDQDLRLKASAIFSKNFSSKKHSFALI 231 Mycoplasma myco...
P47429       149 LSQINPCFNQAERIFNILSTADLNLQP-VVYqNKKYPINSVSDYQSLLE---NTNRGIRKACYEKWIEIYWTNRNSLSLS 224 Mycoplasma geni...
Q98QP0       160 LIKVSRGNIELYKVYGILTNSELDYGYALSSdGKRKIEINLSNRFNLLK---DQDENIRKTTYLNWNKASAKHKETLSSL 236 Mycoplasma pulm...
WP_010888264 161 LGAVQAPFASERGIHPALANMDLDFGSAGGQ--KITQGNVDRLTS-------DPDREIRREAWEHYADAHLAAKHSQAAM 231 Deinococcus rad...
WP_000435570 154 LTNLGEVFYSPQDIYTKMRAGDFEMADFEAH-GKTYKNSFVTYENFYQN---HEDAEVREKSFRSFSEGLRKHQNTAAAA 229 Streptococcus p...
WP_006688433 151 VTAISRFSSSFGDIFDVLLDSDMQYQDGINYkKQKVCFKNQTDLYVASK---SNDRALRKSAYESHFKAIYDLRNTFSKL 227 Ureaplasma parvum
WP_006688614 148 FSTLIRADEGFSTIFSTYTNNDMKFSDAIDAkGKKHPIKNEAEAFVHLK---SKDRVLRKSAYLSMYRAYYDSRESITKM 224 Ureaplasma parvum
BAB95137     232 YNMQVQQEKIEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMR-DlAPVMQKYAKLLQRIHG----LDNMRFEDLKISV 306 Staphylococcus ...
AAS44496     240 YATEVKKQVTLSRLRKFESVTHMLLEPQKVPLEMYNNQLDIIYK-ElAPHMRRFADLKKKVLG----LDQMLFCDLHAPL 314 Bacillus cereus...
O51264       225 IISDFKKNHFIAKTRRFQNTFSMQLFSNNIDKKVYTNLIETVNE-N-LPVLNDYYEFRKKVLN----QEYLYHYDVYVPL 298 Borrelia burgdo...
AAS13156     261 YTGQVQQNVALAKIRGYASAREKSLYVDKVPTAVYDNLVDTIHK-N-LKPLHKFYSMLKKHLG----LKELRHYDVYMPL 334 Treponema denti...
O31605       302 LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINK-H-LPLLHRYIALRKKVLE----LDEVHIYDLYTPL 375 Bacillus subtil...
AAL95083     233 YRAIVQRNVASCNARNYESSLDRALENKNIPREVYFSLVESTQE-N-TAPLRRYVELRKKALK----LKEYHYYDNSINI 306 Fusobacterium n...
CAE76879     232 YEGILQSDHEDTKLRNYESSLQASLSSDSVPVDIYLKLLEVGKK-Y-IKPLEDFLLLTKKHFK----LDKFYPSDKQLKL 305 Mycoplasma myco...
P47429       225 LVENYIQLENFAKLKNHPSYIAQTAFNDEIEVGFIDFVYQQVAQ-F-AKTFQAFIRLKKQIYKhvlkVNKVEPYDLTLTL 302 Mycoplasma geni...
Q98QP0       237 LYQHFSKLSADALARGYSSTVNSFLFEDQVDEKLLKNLYDKVSS-N-KKVFQKYYQNYKKFFEkknsK-QMEAWDIYLPL 313 Mycoplasma pulm...
WP_010888264 232 YATNVRQNVFLARARRYPDAITASLSPDNIPTEVVTTLLDTYRA-N-TPIWHRYWKVRRDWLG----LSELREYDVKASL 305 Deinococcus rad...
WP_000435570 230 YLAQVKSEKLLADMKGYDSVFDYLLAEQEVDRVMFDRQIDLIMKdF-APVAQRYLKHVAKVNG----LEKMTFADWKLDL 304 Streptococcus p...
WP_006688433 228 LYYEYVKQNELAKLHNFKDYISADAFSDKVDKNFINHIYTQTKK-F-AKGINRYTKYRTLFLKqqyqLTKVEPWDKNLDI 305 Ureaplasma parvum
WP_006688614 225 LYYNYLSLNQQAKAKNFDDYIAKAAFDDVVDKSLITLIYDQVKL-Y-KDTNEDYKKVRNTYLKklikVSKIEPWDNGLPL 302 Ureaplasma parvum
BAB95137     307 DPDYEpEISIEDSKNYIFGALSVLGDDYTNMLREAY-D-QrWIDFAQNKGKDTGAFCASPYF--THSYVFISWTGK-MAE 381 Staphylococcus ...
AAS44496     315 DPEFNpAITYEEAGKLIQESLQVLGDEYSAIIEKGF-K-ErWVDLADNVGKSTGAFCSSPYG--SHPYILITWQNT-MRG 389 Bacillus cereus...
O51264       299 TKGIIfKNSFEDACEKILKSLEVLGNEYTKILRNGLlK-ErWVDKYENTGKRSGAFSAGSYN--GKPYILLNYKDEsIRD 375 Borrelia burgdo...
AAS13156     335 VSEVKkITPYNEAVDIITEALKPLGEEYVKTIRNGLlN-G-WVDKYENEGKRSGAFSAGGYD--SDPYILMNYKEDvIRD 410 Treponema denti...
O31605       376 VKDAGmKVTYEEAKDYMLKGLAPLGEEYASILKEGLeN-R-WVDVYENKGKRNGAYSSGAYG--TNPYILMNWHNN-VNN 450 Bacillus subtil...
AAL95083     307 VDYNK-IFKYDDAKEMVLKSVEPLGEDYQQKMKRAIsE-G-WLDVFETKNKRSGAYSINIYD--VHPYMLLNYQET-MDD 380 Fusobacterium n...
CAE76879     306 VKEYNqTFTVEQAKEHIRKALSILGEEYLKNLEIAWgP-N-KIDYYEDTNKRDGAYSTGGHG--VDPIILMNWDDK-LNS 380 Mycoplasma myco...
P47429       303 FKTKK-SYTIEQAKQDALKVLDLLGDNYIKIVKKAFnE-N-WIDWLADKNKYTGAYSISNVKglEHFFILMNFDKT-KSS 378 Mycoplasma geni...
Q98QP0       314 VVVDE-KYSIEEAQDLVLKSLEPMGSEYISKVKEAFsS-R-WVDYLPVKNKRSGAYSIGSTHgiDKKFILMNFDGT-LNS 389 Mycoplasma pulm...
WP_010888264 306 VPPRE--VSYAQAVEWIAEGMAPLGEEYVNDLRFGLtEdR-WVDYAENDGKRQGAYSNGGGR--VKPYIFMTWNGT-VGS 379 Deinococcus rad...
WP_000435570 305 DSALNpEVTIDDAYDLVMKSVEPLGQEYCQEVARYQeE-R-WVDFAANSGKDSGGYAADPYR--VHPYVLMSWTGR-LSD 379 Streptococcus p...
WP_006688433 306 IDKKN-MFSIESAKNLTLEALALLGSEYINVVQRAFnE-Q-WISWMPNNNKISGAYSISNTKglDKIFILMNYDET-YNS 381 Ureaplasma parvum
WP_006688614 303 ISKKI-DIPIEEAKQMAIDSLSILGDEYVSNIKRAFdE-K-WVSWLPQKGKRGGAYSIGGTKgiSKYYILMNYTNS-LRD 378 Ureaplasma parvum
BAB95137     382 AFVLAHELGHAGHFTLAQKHQpYLESEASMYFVEAPSTMNEMLMANYLFNT---S-DNPRFKRWVIGSILSrTYYHNMVT 457 Staphylococcus ...
AAS44496     390 CFTLAHEFGHAGHFYLANKNQrIMNVRPSMYFVEAPSTMNELLLAQHLLAT---N-DDKRMRRWVILQLLG-TYYHNFVT 464 Bacillus cereus...
O51264       376 MFTLAHEAGHSMHSYFSIKNNpFPHYNYSIFEAEIASIINEQILAEYLLKN---Et-DTNKIKYIKLTQID-DMISTFFR 450 Borrelia burgdo...
AAS13156     411 VFTLVHEGGHSMHSWYSVRNNpYPCYHYTIFEAEVASTFNEELLFRHMLKT---St-DPKMRAYLLSVRAS-DILATLYR 485 Treponema denti...
O31605       451 LFTLVHEFGHSVHSYYTRKHQpYPYGNYSIFVAEVASTTNEALLGEYLLNN---Le-DEKQRLYILNHMLE-GFRGTVFR 525 Bacillus subtil...
AAL95083     381 VFTLAHELGHTLHSMLSSEAQpYSTADYTIFVAEVASTFNERLILDYMLKN---Sn-DSLEKIALLEQALG-NIVGTYYI 455 Fusobacterium n...
CAE76879     381 VNTLAHECGHSVHTLFSEQSQvYPLSQYPIILAEVASTINEHLLFDYMYKN---Tk-SKEEKIYLLQERIF-NLVSTFYR 455 Mycoplasma myco...
P47429       379 LNTLVHELGHSVHSWYASQHQ-SQNIDPTIFYAEIASIANELLLCYYELQL---YkNNHKQLIASLLSQIN-HFFGATTR 453 Mycoplasma geni...
Q98QP0       390 VSTLSHEMGHSMHSYFSDKTQpQSLSSYPIFLAEIASIFNELMLKDYLLEV---SeN-LETKFHILNESIL-NFVGTVHR 464 Mycoplasma pulm...
WP_010888264 380 YSTLAHEIGHSMHSLLASREHaPSVPRYTLFHAEVASNFNQAMSRKNLLAKaraA-GDTEMEVAIIEEALS-NFHRYFFI 457 Deinococcus rad...
WP_000435570 380 VYTLIHEIGHSGQFIFSDNHQsYFNAHMSTYYVEAPSTFNELLLSDYLENQ---S-NDPRQKRFALAHRLTdTYFHNFIT 455 Streptococcus p...
WP_006688433 382 ILTLVHELGHSVHTYFANQSQ-EVYNEYETFYAEIASITNEILMNYHLLKK---YeNDDLMRLYILDEMIS-GFIATTTR 456 Ureaplasma parvum
WP_006688614 379 VQTIVHELGHSMHSLYSNRTQ-KIYSDYKIFYAEIASISNEVYLNYYLLEK---YkNDLEMKLMILDEMIS-GFFATTTR 453 Ureaplasma parvum
BAB95137     458 HLLEAAYQREVYHKVDQGESL-NAPTLNEIMLNVYKQF--------FGDAVDMTEG--AELTWMRQPHYYMG-LYSYTYS 525 Staphylococcus ...
AAS44496     465 HLLEGEYQRRVYSLAEEGGAL-TATTLTEIKANVLSTF--------WGDSVEIDEG--AGLTWMRQPHYYMG-LYSYTYS 532 Bacillus cereus...
O51264       451 QTMFAEFEYIIHEMISKEEPV-VKETLTETYMNLLKKY--------FGPSLKFDEL--SPLECLRIPHFYSP-FYVYQYA 518 Borrelia burgdo...
AAS13156     486 QTMFAEYEKITHALVESGTPL-TVENLRSEYRKLLELY--------FGPEMVFEDV--SDLEGMRIPHFYRA-FYVYKYS 553 Treponema denti...
O31605       526 QTMFAEFEHLIHTKAQEGEPL-TPELLTNVYYDLNKKY--------FGDGMVIDKE--IGLEWSRIPHFYYN-YYVYQYA 593 Bacillus subtil...
AAL95083     456 QTLFATYEYEAHKLIEEYKAI-TPDILSEIMFNLFKKY--------FGDMVTIDEL--QKIIWARIPHFYNSpFYVYQYA 524 Fusobacterium n...
CAE76879     456 QIQFADFEYRASQLVSNKTPL-TSEVLNNLFKEVENDYg-------YKIFDKLDDNikSGYGWPRISHFFHSpFYVYKYA 527 Mycoplasma myco...
P47429       454 QIMFSQFEKDTLYLIRVNQKP-DFKTLIKIYANTAVKYqgfkpevvANKLKKTQYQk-sLSHIIAIPHFYAGnFYVYKYA 531 Mycoplasma geni...
Q98QP0       465 QTLWSEYEYTLYNKIDKGEPVgTYTKIDEIYEQISQKYk-------VSDLKNHHPEdeKNVIGVNVPHFYYh-FYVYKYA 536 Mycoplasma pulm...
WP_010888264 458 MPTLAAFELESYRRIEAGGTL-SAPDLIDLTADLLGQG--------YGDGVTMDRGrsGSLWMQFSTHLYAN-FYAYQYA 527 Deinococcus rad...
WP_000435570 456 HLLEAAFQRKVYTLIEEGETF-GASKLNSIMKEVLTDF--------WGDAIEIDDD--ATLTWMRQAHYYMG-LYSYTYS 523 Streptococcus p...
WP_006688433 457 QAIFSNFEWVANEWINQGEEF-SWNKIVLAYLEINHDYtg----ykYNKNKISKYDeaNALILINIPHFYTGnFYVYKYV 531 Ureaplasma parvum
WP_006688614 454 QVIFSNFEWIANELINSGAPF-TADVVMKEYQKLELEYtn----kpIVEDLNSIYSl-sSITPLRIPHFYVGnFYVYKYA 527 Ureaplasma parvum
BAB95137     526 AGLTIGTVVSQKIKNEGQPAVDAWL-ETLKKGGSVSPVELANIAGVDITTEQPLKSTIQYISDLVDEVEKL 595 Staphylococcus aureus su...
AAS44496     533 AGLTASTAVAQMIKEEGQPAVDRWL-DVLRAGGTMKPLELMKHAGVDMSKPDAIRRAVSYVGSLIDELERS 602 Bacillus cereus ATCC 10987
O51264       519 TGIAAALSIYKGIKENKKDAVENYI-KFLKTGGSKYPLDSLNITGVDLTKKATIENTINIFKCRLEEIKKI 588 Borrelia burgdorferi B31
AAS13156     554 TGISASMALAERVCSGGDKEREDYF-KFLKSGGSRYPIESLKLAGVDMASPAPVQAACDNFAKIVDELEKA 623 Treponema denticola ATCC...
O31605       594 TGYSAAQALSSQILKEGKPAVDRYI-DFLKAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEEL 663 Bacillus subtilis subsp....
AAL95083     525 TSFASSAKLYEDLKAN-LENREKYL-TLLKSGGNNHPMEQLKLAGVDLTKKESFDAVAKEFDRLLDILENE 593 Fusobacterium nucleatum ...
CAE76879     528 IDVTASYKLYDDIKRG---NIQTTL-DFLKAGGHKEPLEIMLDVGIDFNKEQTYLPLINGISDHIKELEEL 594 Mycoplasma mycoides subs...
P47429       532 IGQVAGILVAKKINSGDKKMKDNYF-KFLSSGSSLAPLETIKLLGIDLTSPQPWQEAHNEVKRWLKIVKQS 601 Mycoplasma genitalium G37
Q98QP0       537 IGMIVANVFYQKYKEEGKQALEFYInKFLSAGGRDWPVEILKDAGIDLYDSKIYDLAFKNFEQTIDQFVEI 607 Mycoplasma pulmonis UAB ...
WP_010888264 528 TGISAAHQLLEKFDADPEGARESYL-RYLKSGGSLDPIDALREAGVDMLSPEPVQATFRTLEGYVARLEEL 597 Deinococcus radiodurans
WP_000435570 524 AGLVISTAGYLHLKHSETGA-EDWL-NLLKSGGSKTPLESAMIIGADISTDKPLRDTIQFLSDTVDQIISY 592 Streptococcus pneumoniae
WP_006688433 532 IGQICGLINAIRIFNNKANAKEKYF-CFFKSGGSLSPLETINILDIKINENDVWEEVNIIFNSWIDDYIKI 601 Ureaplasma parvum
WP_006688614 528 VGQVAAIISGHRVFTKVTGAKQKVF-DFLSSGGSKDPLDTIKLLGVDLTKPQAWQEALEIVKLWIKDYKQT 597 Ureaplasma parvum
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