1T9H,2YKR


Conserved Protein Domain Family
TIGR00157
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TIGR00157: TIGR00157 
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ribosome small subunit-dependent GTPase A
Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). [Protein synthesis, Translation factors]
Links
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Statistics
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PSSM-Id: 272934
Aligned: 8 rows
Threshold Bit Score: 333.227
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1T9H_A        51 PLVGDYVVYQAEN------------D------KE----GYL--MEIK---ERTNELIR---------P--------PICN 86  Bacillus subtilis
P52640        45 VMVGDQVRVELPPslllhgrsntapVp-----MV----AEGdlGAIAkvyPRRTVLER---------P--------PVAN 98  Synechocystis s...
P75523        42 LLVGDKVTLENG--------------------VI----VAVe--------ERKNTLVR---------P--------KVVN 72  Mycoplasma pneu...
P45339        74 LVVGDKVVWRKGN------------Eq-----LQ----GVS--GVIEaihPRENEISRpdyy-dglkP--------IAAN 121 Haemophilus inf...
WP_001486762  60 LVTGDRVVWRPGK------------P------AAegvnVKG--IVEAv-hERTSVLTR---------PdfydgvkpIAAN 109 Escherichia coli
WP_010869335  42 LMVGDRVQLEDGA------------I------TK----Vl----------ARKNELTR---------P--------RVAN 72  Mycoplasma geni...
WP_002556701  46 LVPGDIVLGYIYS------------S------RK----VYI--DKRl---SRKNILWRynkkadlrqT--------IVSN 90  Lyme disease sp...
2YKR_W        73 LVTGDRVVWRPGK------------PaaegvnVK----GIV--EAVH---ERTSVLTR---------PdfydgvkpIAAN 122 Shigella boydii...

1T9H_A        87 VDQAVLVFsAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEdtiqAYAEDYRNIGYDVYLTSSKDQDSLAD 166 Bacillus subtilis
P52640        99 AEQICLVFaLTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQETDVK----FWGDRLAAWGYAPIIISVENRWGVEK 174 Synechocystis s...
P75523        73 VDQVVIVQsLIEPKINWQQLFKLLIHFHAQNVARLVLVITKNDLEFEPAEk---ARLSELTSFGYQLFFTAP-NADLPLT 148 Mycoplasma pneu...
P45339       122 IDRIIIVS-AVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQei-eDQLKIYQDIGYEILMISAKSGENMEK 199 Haemophilus inf...
WP_001486762 110 IDQIVIVs-AILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAfv-nEQMDIYRNIGYRVLMVSSHTQDGLKP 187 Escherichia coli
WP_010869335  73 VDQIVLIQsLVQPKINWIQLLKLLVYFNAKLIDEIPILITKTDLDFDPMEk---QKLIDLKQFNYQLFFVS-KNEPLPSE 148 Mycoplasma geni...
WP_002556701  91 IDNVLIVSsANFPEMKNFFIDRVLIVAEEQNIVPIIVINKIDKGISQKAQ----EFSEIYENLGYKVLKTSVKTYEGIKE 166 Lyme disease sp...
2YKR_W       123 IDQIVIVs-AILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAfv-nEQMDIYRNIGYRVLMVSSHTQDGLKP 200 Shigella boydii...

1T9H_A       167 IIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR-TNEISEHLGRGKHTTRHVELIHT-SGGLVADTPGFSSLEFTDIEe 244 Bacillus subtilis
P52640       175 LQEKLRSRISLMAGPSGVGKSSLINLLVPGVEQQ-VKNVSGKLRKGRHTTRHVELFDLpHGGLLADTPGFNQPDLAVEP- 252 Synechocystis s...
P75523       149 LFTELQNRFSVFMGQSGVGKSSLINRLDSQIHQA-IQ-ALSAHQFGKNTTTSTVMFPF-QNGFICDTPGFNVIDFPNLK- 224 Mycoplasma pneu...
P45339       200 LTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQ-VGDVSETSGLGQHTTTSSRLYHLpQGGNLIDSPGIREFGLWHLDa 278 Haemophilus inf...
WP_001486762 188 LEEALTGRISIFAGQSGVGKSSLLNALLGLQKEIlTNDISDNSGLGQHTTTAARLYHFpHGGDVIDSPGVREFGLWHLEp 267 Escherichia coli
WP_010869335 149 LIDIFSKKLSVFTGQSGVGKSSLINRLDPSLKQK-IQ-ALSVNKFGKNTTTKTTLFSF-RGGFICDTPGFNVISIKNLK- 224 Mycoplasma geni...
WP_002556701 167 VKEVLKNSRTSFIGQSGVGKSSLINLIDSRASQS-VNEISHKYSRGKHTTVYSISFHS-DSGIIVDTPGIKEFGIETLPf 244 Lyme disease sp...
2YKR_W       201 LEEALTGRISIFAGQSGVGKSSLLNALLGLQKEIlTNDVSDNSGLGQHTTTAARLYHFpHGGDVIDSPGVREFGLWHLEp 280 Shigella boydii...

1T9H_A       245 EELGYTFPDIREKSS--SCKFRGCLHLKEPKCAVKQAVEDGElkqyRYDHYVEf-MTE 299 Bacillus subtilis
P52640       253 AQLIHLFPEARQQLTgqECFFKDCLHRGEPDCAVGQDWERYE----HYLTFLEevLAQ 306 Synechocystis sp. PCC 6803 substr. Ka...
P75523       225 QLAAQHFVGFASLIG--QCHFSNCTHQSEKGCFIVSAVTQKSyslwLYESYLK--LIN 278 Mycoplasma pneumoniae M129
P45339       279 EQITKGYREFQYVLG--TCKFRDCKHLSDPGCALREAVEQGKispvRYDNYHR--LIE 332 Haemophilus influenzae Rd KW20
WP_001486762 268 EQITQGFVEFHDYLG--LCKYRDCKHDTDPGCAIREAVEEGKiaetRFENYHR--ILE 321 Escherichia coli
WP_010869335 225 ILAAQHFVGFQKMIS--KCHFSNCYHQYEKDCFVTTSVMKNRypswLYEKYRK--MIN 278 Mycoplasma genitalium
WP_002556701 245 ENLKYYFKEFENFAS--FCKYKSCLHVSEPYCSVTSSLDNGis-klRYESYLK--ILs 297 Lyme disease spirochete
2YKR_W       281 EQITQGFVEFHDYLG--LCKYRDCKHDTDPGCAIREAVEEGKiaetRFENYHR--ILE 334 Shigella boydii CDC 3083-94
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