Conserved Protein Domain Family
fdhD_narQ

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TIGR00129: fdhD_narQ 
formate dehydrogenase family accessory protein FdhD
FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport]
Statistics
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PSSM-Id: 272923
Aligned: 6 rows
Threshold Bit Score: 258.938
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P32177        33 RLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNgLEVQI-ELSSRRFMGLKER 111 Escherichia col...
P44449        28 KEDILAVEIPVSLVYNGISHAVMMCSPNNLEDFALGFSLTEGIINKPEDIYGIDVVEVCNgIEVQI-ELSSRKFMALKEH 106 Haemophilus inf...
P39756        22 VEDRMVTEFPLTVILNGSEFVTLVCTPEHIEELVIGFLASEGVIRFQKEIKRFTIDESLG--FVYV-DLV--HPETLDQK 96  Bacillus subtil...
Q57743        18 MEDYVAVEESYNIFINGEFVKSLSMSPNFLNEFAVGFAISEGFLN---KIDKVEVDKNN--INIFG-EKNDREI---KNN 88  Methanocaldococ...
O27590        19 VPEKVVNDIEVRIRINGGMEQRFTASPQALEEFATGYLLGEGLVDSVDDIVSIEISDNIIdAEIESgDLDIRRELVM--- 95  Methanothermoba...
WP_010877879   7 KTLELARESRVTV-IAGRTQYHLMCTPKNLIELAVGFVISEGIAKSLDEVEVSKIEDDI--IYVKM-DGEHSSTTIRS-- 80  Archaeoglobus f...
P32177       112 RralagrTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQ---PVGQLTGCTHAAAWMLPsGELVGGHED 188 Escherichia col...
P44449       107 RrnltgrTGCGICGTEQLNQVYKTFPKLDCTFQFDLNLLDSCLIDLQKNQ---LLGCKTGATHACAFFDLyGSMLAIYED 183 Haemophilus inf...
P39756        97 Dyt--krVIGSCCGKGRHFYFQQDVKTAKTAVSQIKISPEACLALMKDMQqgsGTFQDTGGVHNAALCDT-EKLLLMRTD 173 Bacillus subtil...
Q57743        89 Kn------------NKE--------------IKIDIEIIKKIISYEIKAK----YWEITGSFHWASMFDLkGNSIIFVED 138 Methanocaldococ...
O27590        96 ---------GSDCFGGWRQR-VEMVGPVDSDLRVRADDIFLAFKRMVKSA---VVWRMTGGTHVAALVTG--DEFRVFED 160 Methanothermoba...
WP_010877879  81 -------SGCIGVFREREE-IPR----VKAGERFTLEEVREALNYIETEE-----YRKTRGYHTAVIVGK-DGVVSRMYD 142 Archaeoglobus f...
P32177       189 VGRHVALDKLLGRRSQEGEswQQGAVLVSSRASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATV 268 Escherichia col...
P44449       184 VGRHVALDKLLGWHAKSGK--PRGFILASSRASYEMVQKTVACGVEMLVTISAATDLAVTMAEKHNLTLIGFAREGKGNI 261 Haemophilus inf...
P39756       174 IGRHNALDKLYGHCLLNGMsvRDKLIVFSGRISSEVLLKAAKIGVSIVISKSAPTELAIQMAEELNITAIGFVRNGSFNV 253 Bacillus subtil...
Q57743       139 IGRHNAVDKVIGYAILNNYnlNKLILRYSGRIPSDIVKKAINSGLNIIISKSPPTDKAIELAEENNILLIGFARNGKFNI 218 Methanocaldococ...
O27590       161 VSRHVAVDKVIGSGAMDGVnfRESFIVYSGRMPADMLIKVVRAGVPIIASNAAPTSSGYDAAQRTGLTMLGFVRGKRFNI 240 Methanothermoba...
WP_010877879 143 VGRHNAVDKAIGSALLKGAelSKTFLLLSGRISRGMAMKCARVGIPLIASKAAILDSAIEVCEKSGIAAVSFAT----NI 218 Archaeoglobus f...
P32177       269 YTHPQRLSN 277 Escherichia coli K-12
P44449       262 YSGHLRLHN 270 Haemophilus influenzae Rd KW20
P39756       254 YTHPERIRE 262 Bacillus subtilis subsp. subtilis str. 168
Q57743       219 YTSGRLWEE 227 Methanocaldococcus jannaschii DSM 2661
O27590       241 YSHPERII- 248 Methanothermobacter thermautotrophicus str. Delta H
WP_010877879 219 AVEGEALLL 227 Archaeoglobus fulgidus
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