1HXD


Conserved Protein Domain Family
birA_repr_reg

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TIGR00122: birA_repr_reg 
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BirA biotin operon repressor domain
This model represents the amino-terminal helix-turn-helix repressor region of the biotin--acetyl-CoA-carboxylase ligase/biotin operon repressor bifunctional protein BirA. In many species, the biotin--acetyl-CoA-carboxylase ligase ortholog lacks this DNA-binding repressor region and therefore is not equivalent to the well-characterized BirA of E. coli. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. [Regulatory functions, DNA interactions]
Statistics
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PSSM-Id: 272918
Aligned: 6 rows
Threshold Bit Score: 95.2228
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1HXD_A         6 VPLKLIALLANGEFhsgEQLGETLGMSrAAINKHIQTLRDWGVDVFTVpGKGYSLPEPIQLLNAKQILGQL 76  Escherichia coli
P46363         2 MNFTLLTYLADCQP---KVRSELEKFS-KNLEEDIQQLREIGLDILVD-GQDYRLVPMLPLLNPQQISTAL 67  Haemophilus influenzae R...
P42975         7 KDLIELFSQAGNEFisgQKISDALGCSrTAVWKHIEELRKEGYEVEAVrRKGYRLIKKPGKLSESEIRFGL 77  Bacillus subtilis
P06709         6 VPLKLIALLANGEFhsgEQLGETLGMSrAAINKHIQTLRDWGVDVFTVpGKGYSLPEPIQLLNAKQILGQL 76  Escherichia coli K-12
WP_028328034   1 MPARLLPLLTDRPQs-gDDLGRALDLGrVTVNTLARRLQEDGVPVLIS-RAGYALEPGTPAPGLVPLRGQF 69  Deinococcus radiodurans
WP_010877588   8 TDYRVYRILSENPLs-gEKLAKKLGISrTAVWKAVQKLKECGVYVESN-ASGYTIAGEEELNPYEVARLAF 76  Archaeoglobus fulgidus
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