2FPO


Conserved Protein Domain Family
TIGR00095
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TIGR00095: TIGR00095 
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16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]
Links
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Statistics
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PSSM-Id: 188022
Aligned: 8 rows
Threshold Bit Score: 225.752
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2FPO_A         5 KPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNW--LAPVIVDAQCLDCFAGSGALGLEALSRYAAGATL 82  Escherichia col...
P10120         3 KPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNW--LAPVIVDAQCLDCFAGSGALGLEALSRYAAGATL 80  Escherichia coli
WP_005693161   6 TPNAK--GEVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNW--LMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTF 81  Haemophilus inf...
WP_002656751   4 KIVLKFLFMYVSS-GKYKGKKILFPKNGSVRPVMSLVREAFFSI--IFKDIVNSKFLDVFAGTGIMSVEALSRGASLAHL 80  Lyme disease sp...
AAA50947      19 RPLARESGALDPDHRRCRRRRRIAVPPRGTRPTTDRVRESLFNIvtARRDLTGLAVLDLYAGSGALGLEALSRGAASVLF 98  Mycobacterium t...
BAM54557       1 ---------mfsamrIYGNRLLKTLPGQQTRPTTGKVRLALFNI--WRGEIQHCHWLDLCAGNGTLGAEALCRDADKVVA 69  Bacillus subtil...
CAB11354       2 rVI-SGSKK---------GRSLKAVAGTSTRPTTDKVKESIFNM--IGPYFDGGRGLDLFAGSGGLGIEALSRGFEHCIF 69  Bacillus subtil...
WP_001132760   1 mPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNT--LQAEINGAHFIEVFSGSASMGLEALSRGAKSAVF 78  Helicobacter py...

2FPO_A        83 IEXDRAVSQQLIKNLATLK----AGn--ARVVNSN--AXSFLAQKGT-PHNIVFVDPPFRRGL--LEETINLLED----- 146 Escherichia col...
P10120        81 IEMDRAVSQQLIKNLATLK----AGn--ARVVNSN--AMSFLAQKGT-PHNIVFVDPPFRRGL--LEETINLLED----- 144 Escherichia coli
WP_005693161  82 LELDKTVANQLKKNLQTLK----CSseqAEVINQSslDFLKQPQNQP-HFDVVFLDPPFHFNL--AEQAISLLCE----- 149 Haemophilus inf...
WP_002656751  81 VECNRKIKITLVENFSFVE---------EFYKFFFqrAEDFLSKKDL-FYDFIYLDPPFNYKN--KINLLEIILK----- 143 Lyme disease sp...
AAA50947      99 VESDQRSAAVIARNIEALG----LSg--ATLRRGAvaAVV--AAGTTsPVDLVLADPPYNVDSadVDAILAALGT----- 165 Mycobacterium t...
BAM54557      70 IEQSAKVCTIIKENWQKLA----KPgqqWSVLRGDvlKLLPSLAGQT--FDRIYFDPPYGSGL--YNPVLTLVGE----- 136 Bacillus subtil...
CAB11354      70 VDRDFKAIQTVKSNLKTLE----LTkhaQVYRNDAerALHAAAKRET-GFRGIFLDPPYKEQK--LKALLTLIDE----- 137 Bacillus subtil...
WP_001132760  79 FEQNKSAYKTLLENISLFKnrlkKEmeiQTFLDDAfkLLPTLCLKNG-VLNIIYLDPPFETSG--FLGIYEKCFQalerl 155 Helicobacter py...

2FPO_A       147 NGWLADEALIYVESEVE-NGLPTVPANWSLHREKVAGQVAYRLYQ 190 Escherichia coli K-12
P10120       145 NGWLADEALIYVESEVE-NGLPTVPANWSLHREKVAGQVAYRLYQ 188 Escherichia coli
WP_005693161 150 NNWLKPNALIYVETEKD-KPLIT-PENWTLLKEKTTGIVSYRLYQ 192 Haemophilus influenzae
WP_002656751 144 GKILNDKVSIIMHYPSN-EDLEINTSKFSVYNLKRYGGSKLIFLK 187 Lyme disease spirochete
AAA50947     166 NGWTREGTVAVVERATT-CAPLTWPEGWRRWPQRVYGDTRLELAE 209 Mycobacterium tuberculosis
BAM54557     137 LQILSPTGEMAVEYDRHhWQPPEQIAGLELMRQKKYGLSNLAFYW 181 Bacillus subtilis BEST7613
CAB11354     138 YQMLEEDGFIVAEHDRE-VEL---PETVEIL-------------- 164 Bacillus subtilis subsp. subtilis str. 168
WP_001132760 156 LKRFNPKNLLVVFEHESmHEMPKSLVTLAIIKQKKFGKTTLTYFQ 200 Helicobacter pylori
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