Conserved Protein Domain Family
tRNA_TruD_broad

?
TIGR00094: tRNA_TruD_broad 
tRNA pseudouridine synthase, TruD family
an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification]
Statistics
?
PSSM-Id: 272903
Aligned: 7 rows
Threshold Bit Score: 411.867
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q08647       163 LLREAFKNELESVttDTNTFKIARSNRNSRTNKQEkinqt-rdanGVENWGYgp-sKDFIHFTLHKENKDTMEAVNVITK 240 Saccharomyces c...
Q57261         1 MIEFDNLTYLHGK--PQGTGLLKANPEDFVVVEDL----------GFEPDGE----GEHILVRILKNGCNTRFVADALAK 64  Escherichia col...
P44039         1 MLEQLPYLALKTP--PKTTALLKAECADFIVKEHL----------GYEMSGD----GEFVALYVRKTDCNTLFVGEKLAK 64  Haemophilus inf...
P55985         2 NLNFMPLLHAYNH--ASIDFHFNSSARDFCVHEVP----------LYEFSNT----GEHAVIQVRKSGLSTLEMLQIFSQ 65  Helicobacter py...
WP_010879173   4 KVGIECYITST----PGMGGEIKAEPEDFYVEEIA----------EFNLSDE----GDFLIIRVEKKNWDTLNFARVLSN 65  Archaeoglobus f...
WP_010870092  35 KLKEMPLNMNKYLtdAYTGGIIKKYPEDFIVEEITpegiilevgkSIEFKDEenwkGNYIHFTLEKRNWTTLDAIREIAN 114 Methanocaldococ...
WP_010877138   1 MLNAETYVTST----EGTGGRIRVHNRDFEVEEIP----------LTEPSGS----GPNTWIWIEKEGRTTLDVLLDIAR 62  Methanothermoba...
Q08647       241 LLRVPSRVIRYAGTKDRRAVTCQRVsISKIGLD---RLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFVVVIRDVTtg 317 Saccharomyces c...
Q57261        65 FLKIHAREVSFAGQKDKHAVTEQWL-CARVPGKe--MPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVS-- 139 Escherichia col...
P44039        65 FAGVSERNMGYAGLKDRRAVTEQWF-CLQMPGMe--TPDFSQFELDGVEILTVTRHNRKIRTGSLEGNYFDILLRGAE-- 139 Haemophilus inf...
P55985        66 ILGVRIAELGYAGLKDKNALTTQFI-SLPKKYApllEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTpl 144 Helicobacter py...
WP_010879173  66 ALGISQKRISFAGTKDKRALTVQYFsIYGVKKE-----EIERVNLKDAKIEVIGYARRAIQLGDLLGNFFRIRVYGCR-- 138 Archaeoglobus f...
WP_010870092 115 RVGKQRKHFGFAGNKDKYAVTTQRVgCFNVKLE-----DLMKVKIKGIILRDFQKTNRKIRLGDLWGNRFTIRVREPEl- 188 Methanocaldococ...
WP_010877138  63 ELHLDRRRMGFAGMKDKRAVTRQWI-CVSNTAPs--EVKAIEERIRNVKFLRVTANEKKLRMGQLLGNRFRILIRDTEid 139 Methanothermoba...
Q08647       318 NSEVsLEEIVSNGCKslseNGFINYFGMQRFGtfsisthtigrelllsnWKKAAELILSDQD-NVLPKSKEARKIWAETk 396 Saccharomyces c...
Q57261       140 NRDD-VEQRLIDICV----KGVPNYFGAQRFG-----------------IGGSNLQGAQRWAqTNTPVRDRNKRSFWLS- 196 Escherichia col...
P44039       140 ESDE-LKARLDFVAN----FGFPNYFTEQRFG-----------------RDGHNLTQALRWAqGEIKVKDRKKRSFYLS- 196 Haemophilus inf...
P55985       145 NAQK-TKQVLEQIAQ----FGMPNYFGSQRFG-----------------KFNDNHQEGLKILqNQTKFAHQKLNAFLIS- 201 Helicobacter py...
WP_010879173 139 -DGEiFQETRNELME----KGTPNFFGLQRFGsirfithevgklilqnnYEEAFWVYVAKPFeGENEEVRKIREILWETr 213 Archaeoglobus f...
WP_010870092 189 KGKE-LEEALNKLCKl---KYFLNYYGVQRFGttrpithivgrfiierdWEGAFHAYCGTPLpYDDKKSKLARELVDEE- 263 Methanocaldococ...
WP_010877138 140 EPLEtAKATLQELED----KGVPNYYGWQRFGspranthlvgralvhgdVKGAVDSYIGNPLeGESEIVSEARRAYDRG- 214 Methanothermoba...
Q08647       397 DAALALKQMPRQCLAENALLYSLSNQrkeedgtysENAYYTAIMKIPRNLRtMYVHAYQSYvwnsiaSKRIELHGLKLVV 476 Saccharomyces c...
Q57261       197 AARSALFNQIVAERLKKADVNQVVDG---------DALQLAGRGSWFVATT-EELAELQRR------VNDKELMITAALP 260 Escherichia col...
P44039       197 AARSEIFNLVVAARIEKSTINQVLPN---------DIVQLAGSHSWFKADEkEDLTALQVR------LENQDILLTAPLI 261 Haemophilus inf...
P55985       202 SYQSYLFNALLSKRLEISKIISAFSVk--------ENLEFFKQKNLSVDSDtLKTLKNQAHpf---kILEGDVMCHYPYG 270 Helicobacter py...
WP_010879173 214 DAKLGLRELPKYLRYERNLLQKLREG----------KSEEEALLSLPKNLKmMFVHAYQSYifnrllSERIRQFGSLKTL 283 Archaeoglobus f...
WP_010870092 264 NFKEAYKKFPKAFFYERRMIKAYIET----------GSYQKAFMILPPYLRcMFINAYQSYlfn-eiINRRFEYGFEPME 332 Methanocaldococ...
WP_010877138 215 DLEEAYELMPSSMRYERMMLRPMLRDlrrg--efsDESYVRAIHALPKPLKrMFVHAYQSYlfnravSERAALGINTHIP 292 Methanothermoba...
Q08647       477 GDLvidtseKSplisgiddedfdEDVREAQFIRAKAVTQEDIDSvkyt--medVVLPSpgfdvlypsnEELKQLYVDILK 554 Saccharomyces c...
Q57261       261 GSG------EW------------GTQREALAFEQAAVAAETELQ---------ALLVR----------EKVEAARRAMLL 303 Escherichia col...
P44039       262 G----------------------EDILAASEIENEIVNQHSAFD---------PLMKQ----------ERMKAARRPLLM 300 Haemophilus inf...
P55985       271 KFFd-----AL------------ELEKEGERFLKKEVAPTGLLDgk------kALYAKnl-------sLEIEKEFQHNLL 320 Helicobacter py...
WP_010879173 284 EEGdfacylTFktrptfsdcsevEVNEARVRFLVKERVASLALPlvgy-dtklKGWSRiald---flsEDNLDLSSFKTK 359 Archaeoglobus f...
WP_010870092 333 GDIl-----ID------------NVPSGALFGYKTRFASGIQGEie------rEIYERenl-----spEDFKIGEFGSFI 384 Methanocaldococ...
WP_010877138 293 GDIv-----IDndqhiihdadpdELEELILNFEAHPTAPLYGSKvplasgrpgEIERRilede-gvslEDFNSIKVPKLG 366 Methanothermoba...
Q08647       555 AdnmdpfnMRRKVRDFSLAGSyrtviqkpksleyriihyddpsqqlvntdldilnntrakesgqkymkakldrympdkgg 634 Saccharomyces c...
Q57261       304 Y-------PQQLSWNWWDDVT----------------------------------------------------------- 317 Escherichia col...
P44039       301 K-------AKGFSWAFEPEG------------------------------------------------------------ 313 Haemophilus inf...
P55985       321 SshaktlgSRRFFWVFVENVTsqyvk------------------------------------------------------ 346 Helicobacter py...
WP_010879173 360 HkefsssgSYRPADTLIEHTGlsf-------------------------------------------------------- 383 Archaeoglobus f...
WP_010870092 385 Gdrr-amiGKIYNMKYWIEDDs---------------------------------------------------------- 405 Methanocaldococ...
WP_010877138 367 Shgm-rraIRFRIWDVDAHESqe--------------------------------------------------------- 388 Methanothermoba...
Q08647       635 ektaVVLKFQLGTSAYATMALRELMKLETS 664 Saccharomyces cerevisiae S288c
Q57261       318 ----VEIRFWLPAGSFATSVVRELINTTGD 343 Escherichia coli K-12
P44039       314 ----LRLKFYLPAGSYATALVRELVNYTEE 339 Haemophilus influenzae Rd KW20
P55985       347 ekaqFELGFYLPKGSYASALLKEIKHEKGE 376 Helicobacter pylori 26695
WP_010879173 384 --tdSTFSFYLPRGCYATVFLREFLKTELS 411 Archaeoglobus fulgidus
WP_010870092 406 ----YVLQFCLKKGNYATSVLREFIEKKD- 430 Methanocaldococcus jannaschii
WP_010877138 389 ---gLTVEFSIPRGCYATSVLREIMKKDVV 415 Methanothermobacter thermautotrophicus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap