4LAB,1KSK,3DH3


Conserved Protein Domain Family
TIGR00093

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TIGR00093: TIGR00093 
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pseudouridine synthase
This model identifies panels of pseudouridine synthase enzymes that RNA modifications involved in maturing the protein translation apparatus. Counts per genome vary: two in Staphylococcus aureus, three in Pseudomonas putida, four in E. coli, etc. [Protein synthesis, tRNA and rRNA base modification]
Statistics
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PSSM-Id: 272902
Aligned: 13 rows
Threshold Bit Score: 173.668
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4LAB_A       110 VGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AA--FKTIKFSgge--- 182 Escherichia col...
P33918        98 AGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK--DLtkPAVLEVIt----- 170 Escherichia coli
P32684       103 IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TK--KCKVKKEap---- 174 Escherichia col...
P44827        87 AGRLDRDSEGLLILTNNGELQHRLADPKFKTEKTYWVQVEGIPEETDLAQLRKGVELKDGV--TK--SAKVRLIsepnlw 162 Haemophilus inf...
P45104       179 VGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGL--AN--FKEIKFTggv--- 251 Haemophilus inf...
Q55578       105 VGRLDRNSTGALLLTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKK--TL--PATLEVIsen--- 177 Synechocystis s...
P55986       104 VGRLDFASEGVLLLSDSKAVVSALMHADL--EKEYLIKIQGFVTREMENAMQEGLKLENAT--KG--AHQKTPIksmefa 177 Helicobacter py...
P45124        98 AGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEK--EPtkPAKLEILd----- 170 Haemophilus inf...
WP_001437920  65 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP--TL--PAGAELVdepawl 140 Escherichia coli
P37765       106 VGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AA--FKTIKFSgge--- 178 Escherichia col...
1KSK_A       101 AGRLDIDTTGLVLXTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKdlTK--PAVLEVIt----- 173 Escherichia coli
3DH3_A       103 IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TK--KCKVKKEapf--- 175 Escherichia coli
WP_010871208   1 MGRLDQDSEGLLLLTSNGKLQHRLAHREFAHQRTYFAQVEGSPTDEDLEPLRRGITFADYP--TR--PAIAKIItepdfp 76  Synechocystis s...
4LAB_A       183 -----------giNQ-WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLp----------------KG----LPR 230 Escherichia col...
P33918       171 -------------PT-QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLd----------------AD----LAP 216 Escherichia coli
P32684       175 ---------------fvFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-----------------SG----IPL 218 Escherichia col...
P44827       163 ern-ppirerkniPTsWLEIKISEGRNRQVRRMTAHIGFPTLRLVRVSMGLLSI-----------------NG----LEN 220 Haemophilus inf...
P45104       252 -----------giNQ-WYDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLm----------------KG----LPR 299 Haemophilus inf...
Q55578       178 -----------kdQI-HLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQL-----------------HTrgkvLGS 228 Synechocystis s...
P55986       178 pfi-gyeiiknhaKYsKLRVIINEGKNRELRRFFAFFNAGVLDLRRVRYGFVNL-----------------NA----LPV 235 Helicobacter py...
P45124       171 -------------DY-NVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLd----------------ES----LEE 216 Haemophilus inf...
WP_001437920 141 wprnppirerksiPTsWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-----------------DN----LAN 199 Escherichia coli
P37765       179 -----------giNQ-WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLp----------------KG----LPR 226 Escherichia col...
1KSK_A       174 -------------PT-QVRLTISEGRYHQVKRXFAAVGNHVVELHRERIGGITL-----------------DAd---LAP 219 Escherichia coli
3DH3_A       176 ----------------vfRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-----------------SG----IPL 218 Escherichia coli
WP_010871208  77 prn-ppiryrasiPTsWLSITLTEGRNRQVRRMTAAVGFPTLRLVRVQIQVTGRspqqgkgksaatwcltlEG----LSP 151 Synechocystis s...
4LAB_A       231 GGWTELDL 238 Escherichia coli K-12
P33918       217 GEYRPLTE 224 Escherichia coli
P32684       219 GEWRDLTD 226 Escherichia coli K-12
P44827       221 GSFRLLSL 228 Haemophilus influenzae Rd KW20
P45104       300 GGWEEMDL 307 Haemophilus influenzae Rd KW20
Q55578       229 GQFRFLSP 236 Synechocystis sp. PCC 6803 substr. Kazusa
P55986       236 GKMRFLNR 243 Helicobacter pylori 26695
P45124       217 GEYRPLTQ 224 Haemophilus influenzae Rd KW20
WP_001437920 200 GEWREVTD 207 Escherichia coli
P37765       227 GGWTELDL 234 Escherichia coli K-12
1KSK_A       220 GEYRPLTE 227 Escherichia coli
3DH3_A       219 GEWRDLTD 226 Escherichia coli
WP_010871208 152 GQWRPLTP 159 Synechocystis sp. PCC 6803
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