1S3L,1SU1


Conserved Protein Domain Family
yfcE

?
TIGR00040: yfcE 
Click on image for an interactive view with Cn3D
phosphoesterase, MJ0936 family
Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown () to act on model phosphodiesterase substrates; a divalent cation was required. [Unknown function, Enzymes of unknown specificity]
Statistics
?
PSSM-Id: 272869
Aligned: 14 rows
Threshold Bit Score: 162.155
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1S3L_A        26 MKIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFV-------------SLFVIKEFENLNANIIATYGNNDG---- 87  Methanocaldococ...
P76495         2 MKLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLnhgprnalpegyaPAKVAERLNEVAHKVIAVRGNCDS---- 76  Escherichia coli
O27802         1 MLIGVISDTHIPDRASEIPEAVFDAFrDVELILHAGDLT-------------SPDILTELETLAP-VECVQGNMDRh--- 63  Methanothermoba...
Q58040        34 MLIGVISDTHLYDRAFELPKAVFDEFsNVDLIIHCGDVT-------------DKEILDSLKDLAK-VVAVKGNMD----- 94  Methanocaldococ...
P38759         1 MLLLALSDAHIPDRATDLPVKFKKLLsVPDKISQVALLGns---------tkSYDFLKFVNQISNNITIVRGEFDNghlp 71  Saccharomyces c...
WP_010878302   4 MRILIFGDTHIPERADEIPREFTDYLvDFDMVVITGDLT-------------SERVLRFAERVAESVIAVRGNMDD---- 66  Archaeoglobus f...
Q58346         1 MKIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFV-------------SLFVIKEFENLNANIIATYGNNDGer-- 64  Methanocaldococ...
WP_010879669   2 KRILAVADTHLKEWN--LPEKLIELMeGADFVVHAGDFE-------------SYKVYKKFSDYE--LYAVAGNSDDd--- 61  Archaeoglobus f...
WP_010876886   3 YLIGLIADSHDNLEAIGRAVDYLNREs-VDLVIHAGDLI-------------SPFTAPEFGKLEMKFEAIFGNNDG---- 64  Methanothermoba...
WP_009885744   6 iKVLVIADTHGQN---QRWIELKNYh-NPDVIIHAGDH----------------MTTKQFMDQNA-TFWVAGNNDS---- 60  Mycoplasma geni...
1S3L_A        88 ------------ERcklKEWLKDINEENIIDDFISVEIDDlkfFITHGHH----QsVLEMAIKSGLYDVVIYGHTHERVF 151 Methanocaldococ...
P76495        77 ------------EV---DQMLLHFPITAPWQQVLLEKQRL---FLTHGHL----F-GPENLPALNQNDVLVYGHTHLPVA 133 Escherichia coli
O27802        64 ------------YG---IETPRSRLFEIESFRVGLIHG-E---VYPRGDT----Q-QLRYLGLELGADVLISGHTHQPFI 119 Methanothermoba...
Q58040        95 -------------Y---LNLPRKEILEINDIKIGVIHGDV---VYPRGDR----L-KLRLLGKEMGVDVLISGHTHTPFI 150 Methanocaldococ...
P38759        72 stkkdkasdnsrPM---EEIPMNSIIRQGALKIGCCSGYT---VVPKNDP----L-SLLALARQLDVDILLWGGTHNVEA 140 Saccharomyces c...
WP_010878302  67 -----------------LPLPHSAKFRVEGLSFGVVHGHQ---VYPRGNR----E-QLEQIALEMDVDVLISGHTHLPDV 121 Archaeoglobus f...
Q58346        65 -----------cKL---KEWLKDINEENIIDDFISVEIDD---LKFFITHghhqS-VLEMAIKSGLYDVVIYGHTHERVF 126 Methanocaldococ...
WP_010879669  62 -----------kIK---EELDEELVFEVEGVRFGLVHKGN---FINQFHD-------LGYKAMELGVDVLVFGHLHRFVL 117 Archaeoglobus f...
WP_010876886  65 ------------ER---DGLRKAYSHLTELSDFKSLRFDD---LRIAVIHghepE-ILECVVGSGRYDLVVTGHTHKRKF 125 Methanothermoba...
WP_009885744  61 ------------I------GNEIEIFQLGQINFVLMHGH----QAPRDNLkkwyQ-LLVLKAQQYPCDVLIFGHSHIEYT 117 Mycoplasma geni...
1S3L_A       152 EEVDDVLVINPGECCGYLT-G-----IPTIGILDTEKKEYREI 188 Methanocaldococcus jannaschii
P76495       134 EQRGEIFHFNPGSVSIPKG-Gn----PASYGMLDNDVLSVIAL 171 Escherichia coli
O27802       120 RELEDMVLLNPGSPTVPRL-T-----DPSVMVLRIDGEKLDAE 156 Methanothermobacter thermautotrophicus str. Delta H
Q58040       151 DDCRDILLLNPGSPTVPRC-P-----LKSIMKLSVE-DKLEAK 186 Methanocaldococcus jannaschii DSM 2661
P38759       141 YTLEGKFFVNPGSCTGAFN-Td----WPIVFDVEDSDEAVTSE 178 Saccharomyces cerevisiae S288c
WP_010878302 122 YRGAKILL-NPGSMTGVWG-GgaystYPSFMVLEVKKGSFRGs 162 Archaeoglobus fulgidus
Q58346       127 EEVDDVLVINPGECCGYLT-G-----IPTIGILDTEKKEYREI 163 Methanocaldococcus jannaschii DSM 2661
WP_010879669 118 EEVRGKLLVCPGSPTQPRM-S-----VASCAEIAVDGSKVDVK 154 Archaeoglobus fulgidus
WP_010876886 126 SDSGTV-TVNPGELCGYLS-G-----ERTLALLDTDSMKCEFV 161 Methanothermobacter thermautotrophicus
WP_009885744 118 NKINMIQLINPGSLQLPRNqTn----TPSYCTFIVNKDELTDL 156 Mycoplasma genitalium
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap