3TKA


Conserved Protein Domain Family
TIGR00006

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TIGR00006: TIGR00006 
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16S rRNA (cytosine(1402)-N(4))-methyltransferase
This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria. [Protein synthesis, tRNA and rRNA base modification]
Statistics
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PSSM-Id: 272849
Aligned: 9 rows
Threshold Bit Score: 405.25
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3TKA_A  38 NY-KHTTVLLDEA---VNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEeGRLLAIDRDPQAIAVAKTIDdPr---FSIIH 110 Escherichia coli K-12
P18595   4 NY-KHTTVLLDEA---VNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEeGRLLAIDRDPQAIAVAKTID-Dp--rFSIIH 76  Escherichia coli
P45057   9 SS-EHITVLLHEA---VNGLALKENGIYIDGTFGRGGHSRFILSQLSSnGRLIAVDRDPRAIAEAHKIQ-Dl--rFQIEH 81  Haemophilus influenza...
P73460  18 DF-HHVSVLPTAL---VEGLEPKPGGYYLDATVGAGGHSERLL-KLGIpLALTMIDRDVQAIAAAMERLqPlv-adRKDI 91  Synechocystis sp. PCC...
P75466   4 NQ-PHKSVLLDEV---IHNLNIKGDGNYLDLTVGFGGHSQHILEQLTT-GTLTGNDMDKDSITFCTELFkDkk-nVVLVH 77  Mycoplasma pneumoniae...
P47464   4 NQqIHQSVLINEV---IHNLNINPCGNYLDLTAGFAGHSQKILEKLTT-GTLTINDVDKESINFCQKLFfKnn-nVVIIH 78  Mycoplasma genitalium...
O25411   4 IEsLHQSVLLQEV---LQAFMPLEEGVLIDCTLGLGGHSKALLSQKPH-LKLIGIDKDKFAQEIAKERLkAfegrYNLLS 79  Helicobacter pylori 2...
O51286   3 NNaFHFPVLLDAIcklIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDF-LSLVGIERDPQILERARQFLsIfeerITYFN 81  Borrelia burgdorferi B31
Q07876   1 MF-QHKTVLLRET---VDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEkGRLIAFDQDDTALQHAKEVLsDykgqLILIK 76  Bacillus subtilis sub...
3TKA_A 111 GPFSALGEYVAERdLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPT-RGQSAAEWLQTAEEADIAWVLKTY 189 Escherichia coli K-12
P18595  77 GPFSALGEYVAERdLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPT-RGQSAAEWLQTAEEADIAWVLKTY 155 Escherichia coli
P45057  82 NSFSHIPEICDKLnLVGKIDGILLDLGVSSPQLDEAERGFSFMKDGPLDMRMDTT-QGLSAEEWLKQVSIEDLTWVLKTF 160 Haemophilus influenza...
P73460  92 SINTWQGNFADFPgQLEQFDGIIADLGVSSPQLDQGDRGFSFRHTAPLDMRMDQS-QDLTAAEIINHWSEKDLARIFYEY 170 Synechocystis sp. PCC...
P75466  78 DNFANFFNHLKQL-KVTKFDGILIDLGVSSYQLDKPERGFSFKHAGPFDMRMHQSdRVPTALDILERLSEEELTHVLKKF 156 Mycoplasma pneumoniae...
P47464  79 DNFANFPVHLKQL-SITKFDGILMDLGVSSHQLNQPNRGFSFKNDGPIDMRMDQSnQKNTALTVLKNLTEQKLSLILKKY 157 Mycoplasma genitalium...
O25411  80 GGFAKRFKEALET-HNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLDMRMDLE-SELNAQKVINSYPIVALEKIFRDY 156 Helicobacter pylori 2...
O51286  82 DWFDNFFVNYPLN---VKANFILVDLGISMFHYKGSKKGFSFLEDEPLDMRLCSSsCKISAAEIVNTYSKYDLEALIYDL 158 Borrelia burgdorferi B31
Q07876  77 SNFRYLKEYLNEQ-GVTEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMDQS-ATLSAKEVVNEWRYEDLVRIFFKY 154 Bacillus subtilis sub...
3TKA_A 190 GEERFAKRIARAIVERNR------EQPMTRTKELAEVVAAATPVKDKFK--HPATRTFQAVRIWVNSELEEIEQALKSSL 261 Escherichia coli K-12
P18595 156 GEERFAKRIARAIVERNR------EQPMTRTKELAEVVAAATPVKDKFK--HPATRTFQAVRIWVNSELEEIEQALKSSL 227 Escherichia coli
P45057 161 GEERFAKRIATAIVDFNKsavkngTEFLSRTSQLAELISQAVPFKDKHK--HPATRSFQAIRIFINSELDELESLLNSAL 238 Haemophilus influenza...
P73460 171 GEERLSRRIARQIVE---------QRPFQTTTDLAEAITKWVPGKYRHGriHPATRTFQGLRIAVNDELGSLEKFIAQAP 241 Synechocystis sp. PCC...
P75466 157 GEIAHPKPIAKALKTLIN------NTKNPTTVEVAETVKAAASNFEKYKsrNYLAKVFQAIRIYLNRELESLEIVLQHIP 230 Mycoplasma pneumoniae...
P47464 158 GDIKHPKPIAIGLKKAVQ------TEKNLTTTQLAKVVKECATGFEKYQsrNYLAKVFQAIRIYLNDEITNLKTALTFIP 231 Mycoplasma genitalium...
O25411 157 GEIKEYKKIAHKIAERRA------KKPFKNAKDLSEFLS----SFSKNKkiHPATLVFQAVRIEVNSELEELKEFLQCAR 226 Helicobacter pylori 2...
O51286 159 SNEHYSRRISKAIVEYRK------IKKIETTKELQSIISK-VYPFSKVKi-NPATKTFQALRIYVNDELARLKRSLPFWV 230 Borrelia burgdorferi B31
Q07876 155 GEEKFSKQIARKIEEARM------KSPIQTTGQLVDLIKDAIPAPARRSggHPAKRVFQAIRIAVNDELRVFEEALEQAI 228 Bacillus subtilis sub...
3TKA_A 262 NVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQv-PAGLPMTEEQLKKLggrqlrALGK-LMpGEEEVAENPRARSSVL 339 Escherichia coli K-12
P18595 228 NVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQv-PAGLPMTEEQLKKLggrqlrALGKlMP-GEEEVAENPRARSSVL 305 Escherichia coli
P45057 239 DMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDi-PKGLPLREDQIQRNqk--lrIIGKaIQpSDAEIQANPRSRSAIL 315 Haemophilus influenza...
P73460 242 HWLKSGGKFGIISFHSLEDRIVKHRFRET--------------EN--LRV------LTKKpIIaGEEEQRQNPRARSAKL 299 Synechocystis sp. PCC...
P75466 231 KLLNNKGRFLVIVFHSLEEKLVRNYIFKLTHFVQ--PPELPVKLTPPFEL------ITKKpILpTEQEIKTNPRVRSAKL 302 Mycoplasma pneumoniae...
P47464 232 NLLKNNSRFLVIVFHSIEEKIVRNFIAKLTSFIQ--PEALPIKLTPAYQL------ITKKpILpSQKELELNPRSRSAKL 303 Mycoplasma genitalium...
O25411 227 NLK--GAILCVISFHSLEDALVKNAFKDYAKNCIcdPSSFKCACSNNHALge---iLTKKpITpSPEEIKNNRRSRSAKM 301 Helicobacter pylori 2...
O51286 231 ENLAKDGILAIITFHSIEDRIVKDFFRSLS--------------CDLYAK------ISKKpIMpSFDEIKKNKPSRSAKL 290 Borrelia burgdorferi B31
Q07876 229 EVLKPGGRVSVITFHSLEDRICKTTFKEKSSLPEl-PPGLPVIPEEFEPElk---lITRKpITaSQEELEENNRARSAKL 304 Bacillus subtilis sub...
3TKA_A 340 RIAERT 345 Escherichia coli K-12
P18595 306 RIAERT 311 Escherichia coli
P45057 316 RVAERI 321 Haemophilus influenzae Rd KW20
P73460 300 RWAEKI 305 Synechocystis sp. PCC 6803 substr. Kazusa
P75466 303 FVIEKK 308 Mycoplasma pneumoniae M129
P47464 304 FVIQKN 309 Mycoplasma genitalium G37
O25411 302 RVFQFK 307 Helicobacter pylori 26695
O51286 291 RVVKKL 296 Borrelia burgdorferi B31
Q07876 305 RIAEKR 310 Bacillus subtilis subsp. subtilis str. 168
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