Conserved Protein Domain Family
PRK14898

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PRK14898: PRK14898 
DNA-directed RNA polymerase subunit A''; Provisional
Statistics
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PSSM-Id: 237854
Aligned: 5 rows
Threshold Bit Score: 1357.64
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
257051866  19 TDIAAV---VEDTDLPRRLKTRVYEAIEDRDGVTVEQADDIAKAVESRYLDTRVDPLDPVGTVSAQSIGEPGTQMSIPGD 95 
15669232    1 MDMEALkqkIEGLDIPQSLKDELFEKLSKEKDLTEEMVDEIIDEVVNAYRKALVEPYEAVGIVAAQSIGEPGTQMSLPYE 80 
76800713    6 DDVEAI---VEDTDLPRRLKDEVYETLESRSGVAPEDVEDIVQAVESQYLETRVDPLDPVGTVSAQSIGEPGTQMSIPAD 82 
261403644   1 MDIEALrkkIDSLNLPKSLKDELFEKLSKDREITDEMVEEIIYEVVKAYENALVEPYEAVGIVAAQSIGEPGTQMSLPYE 80 
296109330   1 MDIEKLrerIYSLDIPDSLKNKLFEKLSKEEGLTEEMIEEIIDEVVKSYKNALIEPYEAVGIVAAQSIGEPGTQMSLPYD 80 
257051866  96 ERVIVRRDGETDVTEIGSLVDGLASVRESTTVEGHEVVSAPEEMEVPSLRADERVEWKPLEQVSRHEAPDELLQFELESG 175
15669232   81 EKIIIKEGEFIKPVEIGKLVDEMIERFGFEKIGNSEVCDLPIDIYALSLDQDEKVHWKRIISCIRHKHNGKLIKIKTKSG 160
76800713   83 EQVVVRRNGETELTEIGPLVDSLMDSRETRSFDDHEVTLAPDGIEVPSLSSEETVEWKPIEEVSRHETPDELLRFELESG 162
261403644  81 EKIIIKEGDYIRAIEIGKLVDDMIEKFGVEKIGESEVCDLPIEIYALSLDQDEKVHWKRIISCIRHKPNGKLIKIKTKSG 160
296109330  81 EKIIVKEGENVRIVEIGKFVDECIDKFGFIKQGVHEICDLPVEIYALSLDQDEKVHWKRIISVIRHKFNGKLIKIKTRSG 160
257051866 176 RTIRATKAHSFVTREDNEVIPVEGSDLEEGDWLPVVRSLDS-DGQDSVDLREYLPASDYwytstltdggattlpggedqi 254
15669232  161 REITATPYHSFVIRKDNKIIPVKGSELKIGDRIPVVKHIPA-NCVEAINISDYVSGNYV--------------------- 218
76800713  163 RSIRATKAHSFVTRQENEVVPVAGEELEAGDWLPVVASLDAtDTQETVDLRKYLPAGDYwytsvladggaeavpggpdql 242
261403644 161 REITATPYHSFVIRKDNKIIPVKGSELKVGDKLPVVKHVPA-NCVEAIDLYESDIKNNS--------------------- 218
296109330 161 RTIVATPYHSFVVRKDNRVVPIEGRELKIGDRIPAIRYMPL-NCISEIDLGEFTNYSTN--------------------- 218
257051866 255 rnkrqaleaGEIEEHAVYPVQGTVGLPERFPLDEETGFFVGAFLAEGNLTDHYVSISNVDETFQNRVRAFAERFDLSVNE 334
15669232  219 ---------VDNINNKIAPKINGKSIPNNIKLDYDFGYFIGIYLAEGSVTKYFVSISNVDELILNKIRAFADKLGLNYGE 289
76800713  243 rnkraaleaGELAEHTAYPVQGTVGLPEQFPLDEETGFFVGAWLAEGSLADHYVSISNVDAAFQSRIRSFAERFDLTVNE 322
261403644 219 ----------------------------TIILDYNLGYHIGVCLAKN--------------------------------- 237
296109330 219 ---------------------------RTLKLDFDFGYFLGLYLADGYSTKYFISIPNKNREVVKIVKRLAEKLGIR--- 268
257051866 335 YENDSGFATGYDIRVNGTVLADFLREVCTVDGEKAIPDFAFGATSSFVRGLLSGYFSGDGNVGKN--AVRASSTSNELID 412
15669232  290 YDNNNGFAESHDIRIYSSTLAEFLSNFGTSSNTKKIAEFVFGANKEFVRGLIRGYFDGDGNVNADrkVIRVTSNSKELID 369
76800713  323 YENDSGFAAGYDIRLNGTILSDFLRAACTDDGEKSIPGFAIGANEAFLKGLLQGYFSGDGNVGTN--AIRSSSTSDRLTA 400
261403644 238 -------------KLDNSAIMSYF-----ASQSKKIPDFALGGNRDFVRGFLKGYFDENAIVDTKlgKIMISSDSKEVAN 299
296109330 269 ------LEVGYEIKLYSPVLSELIQNF--DKKEKRIPDFVFSSEKEFVRGLLQGYFDGNGKVDVEkkKIKIYSQFKELID 340
257051866 413 GVTLLLARFDIYATF-----GTQDDSKTLRVPKKFVPAFTDRIGM-IGERGDELEDLATDVDTDG--PDTTDQIPNFGDS 484
15669232  370 GIAILLARFNIFSIK-----TKTKNQFVLIIPHRYAKKFHEEINFsVEKKKSELERLVSSLNDDKt-YDSIDMIPSIGDA 443
76800713  401 GVGLLLARFDVYATL-----GQQEDSRTLRVPKKHVSRFDNRIGM-VGERGAELEALAESADSDG--PDATDQIPNFGDA 472
261403644 300 GISLLLARFAIYTIKrhkksNSKKEEFIVEIPKPYIKKFYEEIGFsDEEKNNELSQLINKLDNKRyiHDSIDMIPSIGNA 379
296109330 341 GISLLLTRFGIFCVK---------RENGIEISHIYAKKFAEEINSsLPKRAEELNKLVKSLESKVt-YDPIDMIPSIGTI 410
257051866 485 LKQAAKAAGIPSRQVNSAHKRQRVGRNRLRSLVEQIDETAEERPPQLGALE------RAVDGDVVWERIESIRTVEPESG 558
15669232  444 LTKLGEKVDYPKVILKKFERKQKIGRATLQRHLRRIEELAVKKGVNILALKeywllkKAVESDVIWDEIVKIEEISCDKK 523
76800713  473 LEAVAEAADIPQRQVNSATKRQRIDRSRLARLVAAAEAELDGEQSELDALR------QAVTGDVVWDRIESIETVESDHE 546
261403644 380 LTKLGEKVNYPEIILKKFERKQEIRRSILQRHLRRIEELAVKRGINILALKeywllkKAVESDVVWDEIVKIEEIDYDKK 459
296109330 411 LLDISKKLGYPSCKVEKFIKNQKIGRLTLQRHLLNLEKLAKERGFEVEELKvl---kKAVESDVVWDEIVSIEEVDCNN- 486
257051866 559 YVYDFSVAGLETFTTAQGVVTHNTMNTFHYAGVAEIDVTQGLPRLIELVDARKEPDTPMMTVNLDGEYATERERAHEVVW 638
15669232  524 YVYDISVEGLETFTTFDGVLTHNTMRTFHYAGVAEINVTLGLPRMIEIVDARKEPSTPIMTIYLKEEYKDNREKAEEIAK 603
76800713  547 YVYDVSVEGLETFTTADGVVTHNTMNTFHYAGVAEIDVTQGLPRLIELVDARKTPDTPMMTVHLEGEYARDRERAHEVVW 626
261403644 460 YVYDISVEGLETFTTFEGILTHNTMRTFHYAGVAEINVTLGLPRMIEIVDARKEPSTPIMTIHLKEEY-NNREKAEQIAK 538
296109330 487 YVYDLSVEGLETFTTAEGLITHNTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPSTPIMEVYLTDEYKYDKEKAEEVAK 566
257051866 639 KIEAtriLALGDVSTNVADML----VQVDLNPDTLEERWPTADSVESvaeeiaaTIESQLGVETQR-KETVIQFGPEEPS 713
15669232  604 EIES---LTLGSIAESISIDLwtqsIKVELDENRLADRGLTIDDVIE-------AIKKKLKVKIDV-DGTTLYLKIKTPS 672
76800713  627 KIEAtkiLALGDVSTNVADML----VQIDLNEETLAERWPTMESIDDiagriagTIEGELGVDTARpKPTVIEFGPEEPS 702
261403644 539 EIES---LTLGNIAESISIDLwtqsIKVELDEERLADRGLTIENVVE-------AIKKKLKVKIDV-EGSTLYLKIKTPS 607
296109330 567 RIES---LTLQDVAKSIGIDLwtqsIKVELDEKVIEDRGLDIEEIEE-------AIRKKVRVKIER-EGNILYLKVKTPS 635
257051866 714 YRDLLQLVEELREIVFKGIEEVSRVVIRKEEmdedhendEEFVLYTEGSAFGDVLGIEGVDASRTTCNNIHEIYSNLGVE 793
15669232  673 IKALRKRIPKIKNIQLKGIPGIERVLVKKEG--------GEYVLYTQGSNLREVFKIDGVDTTRTITNNIIEIQEVLGIE 744
76800713  703 YRQLLQLVEELREIVFKGIEEINRVVIRKEEte----qgEEFVLYTEGSDLKEVLDIEGVDASRTTCNNIHEIHNNLGIE 778
261403644 608 IKALRKRIPKIKNIQLKGIPGIERVLVKKEErd----gkEEYVLYSQGSNLREVFKIEGVDTTRTTTNNIIEIQEVLGIE 683
296109330 636 VKSLRKRIPKIKNILLKGIPGITRVLVKKDDk------tGEYVIHTQGSNLREVFKIEGVDTRRTITNNIIEIQEVLGIE 709
257051866 794 AARESIIEETMNTLEEQGLdDVNVRHLMLVADIMTNNGVIESIGRHGISGSKDSVLARAAFEVTVSHLLDAAIHGEIDAL 873
15669232  745 AARNAIINEMRNTLEQQGL-EVDIRHLMLVADIMTADGEVKPIGRHGVAGEKGSVLARAAFEETVKHLYAAAERGDVDKL 823
76800713  779 AAREAIIEETMNTLEEQGLdDVNIRHLMLVADIMTNNGEIESIGRHGISGNKDSVLARAAFEVTVNHLLDAAIHGEVDDL 858
261403644 684 AARNAIINEMRNTLEQQGL-EVDVRHLMLVADIMTADGEVKPIGRHGVAGEKGSVLARAAFEETVKHLYASAERGDVDKL 762
296109330 710 AARNAIINEMKNTLEQQGL-EVDIRHLMLVADMMTADGEVKPIGRHGVAGEKGSVLARAAFEETVKHLYSASEKGEVDKL 788
257051866 874 NGVTENVIVGKPIKLGTGDVNLRMGSHTGGGAAD 907
15669232  824 KGVIENVIVGKPIYLGTGCVELTIDREYEEGKNM 857
76800713  859 DGVTENVIVGKPIKLGTGDVDLRMGATRDSGSRA 892
261403644 763 KGVIENVIVGKPIYLGTGCVDLMIDRDYEEGKNK 796
296109330 789 KGVIENVIVGKPIFLGTGCVRLEIDREYEEGKKE 822
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