Conserved Protein Domain Family
PRK12533

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PRK12533: PRK12533 
RNA polymerase sigma factor; Provisional
Statistics
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PSSM-Id: 237129
Aligned: 29 rows
Threshold Bit Score: 279.693
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
186475674   1 MDetgnHAARGGDARAEAARSLRFQQMALPHLDAAYNLARWLCGNGHDADDVVQEAFMRAYRFFDTFHGETARPWLLAIV 80 
295676420   8 AAsargEPNAGTDADADAAKSRRFQQLALPHLDAAYNLARWLCGNPNDAEDVVQEAFMRAFRFFDTFRGDSARPWLLAIV 87 
91783361    1 -MvqtdSEPVRAHGETDAARSRRFQQMALPHLDAAYNLARWLCGNANDADDVVQEAFMRAFRFFDTFRGDSARPWLLAIV 79 
161524571  13 AG-------------DAAARGERFRALVLPHLDAAYNLARWLSGSASDADDVVQEACMRALRFVDSCRGDNARPWLLTIV 79 
189350673  13 AG-------------DAAARGERFRALVLPHLDAAYNLARWLSGSASDADDVVQEACMRALRFVDSCRGDNARPWLLTIV 79 
187923774   1 -MvqtdSEPVRAHGESEAARSRRFQQLALPHLDAAYNLARWLCGNASDADDVVQEAFMRAFRFFDTFRGDSARPWLLAIV 79 
17549870    1 ------MPDLFDPTVDLLTDAQRFAQAVLPHVDAAYNLARWLCGDAQDADDIVQEACLRAFRLFGGFRGGDGRPWLLAIV 74 
300698333   1 ------MPDLPDPTVDMPTEAQRFAQAVLPHVDAAYNLARWLTGDAQDADDVVQEACLRAFRLFGGFRGGDGRPWLLAIV 74 
300694706   1 ------MPDLPDPTVDMPTEAQRFAQAVLPHLDAAYNLARWLSGDAQDADDIVQEACLRAFRLFGGFRGGDGRPWLLAIV 74 
73538081    1 --------------MNAADERHRFAELVLPHLDAAYNLARWLSGSAAEAEDVVQEALLRAYTYFGSYHGDRPRPWLLAIV 66 
186475674  81 RRTWYTEWRRRSGGvNATIEfDENLDDASFEGWSAGSP-DPEALLIREEDTRLVHEALEQLAVEYREVLILRELEEMSYR 159
295676420  88 RRTWYTEWRRRAPS-HDMLEfDETMDDATLDGWSAGGD-DPQTLLIRDEDVRLVHDALALLPVEYREVLILRELEEMGYR 165
91783361   80 RRTWYTEWRRRASS-HETVEfDDTMDDASFDGWTVGGA-DPQALLIRDEDTKLVHEALAQLPVEYREVLMLRELEEMGYR 157
161524571  80 RHTWYSEWRRRTHA-HEVAApDTLEDADVPDDWQPATT-DPLAQLLRGENVRLVNAALAKLPAEYREVLVLREMEDLSYR 157
189350673  80 RHTWYSEWRRRTHA-HEVAApDTLEDADVPDDWQPATT-DPLAQLLRGENVRLVNAALAKLPAEYREVLVLREMEDLSYR 157
187923774  80 RRTWYTEWRRRSSS-HETVEfDDTMDDASFDGWSVGGA-DPQALLIRDEDTKRVHEALAQLPVEYREVLMLRELEEMGYK 157
17549870   75 RNTWFSECARRRQA-HTQPWqDEADLPPA-DDLTTYGA-DPAALLARADDVRRLQAALARLPVAYREVLVLRELEDLPYR 151
300698333  75 RNTWFSECARRKQA-RMQPWqDDADPLPA-DDLATYGA-DPAALLARADDVRRMRAALARLPVAYREVLVLRELEDLPYR 151
300694706  75 RNTWFSECARRKQA-HTQPWqDDADQQPPVDDLAVYGA-DPAALLARADDVRRLQAALARLPVAYREVLVLRELEDLPYR 152
73538081   67 RNTWFSAWNRDQPSrDAATYeDGVDAAQALPGWQDAAErEPLCCLLRAEDVRLVHEALARLSAPLREVIVLRELEDMCYR 146
186475674 160 EIATIADLPVGTVMSRLARGRRKLATALTslqskgsarst-------------ggardggaaqrAPdgtgdvsgarPAVR 226
295676420 166 EIAVVADVPIGTVMSRLARGRRKLAEVLMaqqrgggepvdkgrkggqgsrqearsnrdaqsgrlARsaatappapcAQPA 245
91783361  158 EIALVADVPIGTVMSRLARGRRKLAAVLT-----------------------------------EKqggatapprpSMCA 202
161524571 158 EIAAIADVPIGTVMSRLARGRRRLAALLG-----------------------------------EE-------------- 188
189350673 158 EIAAIADVPIGTVMSRLARGRRRLAALLG-----------------------------------EE-------------- 188
187923774 158 EIAAVADVPIGTVMSRLARGRRKLAALLA-----------------------------------EKqggatashrsSACA 202
17549870  152 DIAAVVDVPVGTVMSRLARARQQLARLLM--------------------------------------------------D 181
300698333 152 DIAAIVDVPVGTVMSRLARARQQLARLLT--------------------------------------------------Q 181
300694706 153 DIAAIVDVPVGTVMSRLARARQQLARLLA--------------------------------------------------D 182
73538081  147 DIAQVAAIPLGTVMSRLARARQALAVAVS-----------------------------------------------ALRV 179
186475674 227 ASTRTQDTSRPAHDGgvapditrktqggwmphapgalPGGLAQEAPDGL 275
295676420 246 RSSGDGRPASSAGMPatatvtqlrafadgrplnipgaAADPAQETPDGL 294
91783361  203 AAPGASKSATASVTPlrasangr------plntpggsAAGNAQETPDGL 245
161524571 189 --AVPARGERAARTP----------------------AGGSASEAIDGL 213
189350673 189 --AVPARGERAARTP----------------------AGGSASEAIDGL 213
187923774 203 AS-GPGRSATASVTPlrasangr------plnspggtAAGSAQETPDGL 244
17549870  182 DGTSARTNVTPIRAS----------------------GAASAKEHHDDL 208
300698333 182 GDTSERTNVTPIRAS----------------------GAASAKEHHDDL 208
300694706 183 EDMSARTNVTPIRAS----------------------GAASAKEHHDDL 209
73538081  180 ERAGQPSGGVATVDG----------------------LAGTAGEVGNGL 206
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