Conserved Protein Domain Family
PRK12518

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PRK12518: PRK12518 
RNA polymerase sigma factor; Provisional
Statistics
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PSSM-Id: 237124
Aligned: 10 rows
Threshold Bit Score: 256.954
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
16330385    1 MIQRSQ--------QGDAEAFRQLYRRYQAKVRSTLYQ-LCGQHQLDDLVQEVFFKVWKGLPKLRNHNFFATWLYRITWN 71 
22297860   29 LIEQCL--------AGHPKGFRELYQRHQQRVRSLLFQ-LCGAVALDDLVQEVFLRAWKGLKGLKHEAKFSTWLYRIAWN 99 
37523153   15 LVWRAS--------RSDGQAFRELYRRYVSKVRGLLYQmMSDIESLDDLTQEVFVKVFKALPGFRGDAQFSTWLFRIAVN 86 
166367663  17 LILKCQ--------RGDRGAFRHLYRLYQPKIRSTLYQ-LCGREFLEDFVQEVFLRLWRGLPKLRSPEYFSTWVYRITWN 87 
158337771  15 LIQGCL--------RGSTQSFRVLYRRHQARVRSTLMS-LCDPEVLDDLVQDVFFRVWKGLPKMEGRAKFTTWLYRITWN 85 
170078712  17 LVCLCQgkigsirgRRDRQSFRILYRRYHQKVRSTLYQ-LCGVALLDDLVQEVFLKAWQGLPRLKNPDYFATWLYRITWN 95 
172037337  18 LVRRCQ--------QGDTLSFKQLYRRYQQRVRATLYQ-LCGSEMLDDLVQEVFLRVWKSLPKLREPSYFSTWLYRITWN 88 
218249128  14 IVLRCQ--------RGDAASFKQLYRRYQQRVRSTLYQ-LCGRELLDDLEQEVFLRVWKALPRLRNPDYFSTWLYRITWN 84 
218440234  20 LIVRCQ--------RGDRTAFHQLYRRYQQKVSSTLYQ-LCGREMLEDLVQEVFIRVWKGLPKLRQPSYFSTWLYRICWN 90 
257062214  14 IVLRCQ--------RGDAASFKQLYRRYQQRVRSTLYQ-LCGRELLDDLEQEVFLRVWKALPRLRNPDYFSTWLYRITWN 84 
16330385   72 VAQDARKQLGRSRQRIHQPStaladnegeisLQLSRPEDSPDLLQLHYQDLVQQGLATLSFEHRTVLVLHDLEDLPQKTI 151
22297860  100 VACDYRRQLATRKSRHQQYL-----------DQQQPFTTAPDLRQLHYEDLVQRGLATLPLEYRSILVMHDLQGLPQKEI 168
37523153   87 CCQDARRRRARRPMAVPIDN------------LPLAARGEDPLGRLDREQLVSQALATLKEEHRDVVILHDLHDRPQDEI 154
166367663  88 VAIDGRRQLAKRQMRMAKSTdee-----nslDSESRPQDSPDLMQLHYEDVVRQGLEILSLEHRAVLVLHDLEDLPQKEI 162
158337771  86 VAADYRRSAAQKRTRWQALI-----------HQLPSQSTEPNWQHLHHQDLIKRGMGQLSFEHRSVIVLHDLQDLPQQEI 154
170078712  96 VATDQRRRFAKQMTLITGLEa---------qIGAVTDPRPEGLGQIYYQDLVQRGLQSLSLEHRAVLVLHDLKDLPQKEV 166
172037337  89 VATDKRRKFAQNLSLNDDGTil--------nIMPSRPEDTPDLMRLHYQDLVQQGLQTLSLDHRAVLVLHDLEDVPQKEV 160
218249128  85 VATDKRRKFAQSPSFTEDDSsl--------nMTPSPSSNTPDLMRLHYQDLVQQGLQLLSLEHRVVLVLHDLEDVPQKEV 156
218440234  91 VAVDGRRQFAKRKQEKRETStdkdd--lsslETLFRSQDTPDLMQLHYQDLVQRGLQTLSLDHRAVIVLHDLEDIPQKEI 168
257062214  85 VATDKRRKFAQSPSFTEDDSsl--------nMTPSPSSNTPDLMRLHYQDLVQQGLQLLSLEHRVVLVLHDLEDVPQKEV 156
16330385  152 AEVLNLPGGTIKSRLFYARRAMREFLQQQGVQD 184
22297860  169 AEILNIPVGTVKSRLFRARGSLRTFFTEAGVSL 201
37523153  155 AKLLNVPVGTVKSRLFYARRQLREWFYARGIEL 187
166367663 163 AQILEIPLGTVKSRLHYARKTMGQFLQKQGVL- 194
158337771 155 AEMFEIPVGTVKSRLYHARAALRKFLQHEGISL 187
170078712 167 AEILGIPPGTVKSRLHHARRSLRQFLETQGVSL 199
172037337 161 ATILELPLGTVKSRLFYARNQMRKFLKQQGAL- 192
218249128 157 ANILKLPIGTVKSRLFYARNQIKKFLQQQGAL- 188
218440234 169 AQILQLPVGTVKSRLHYARNAIKKFLQQEGVLS 201
257062214 157 ANILKLPIGTVKSRLFYARNQIKKFLQQQGAL- 188
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