Conserved Protein Domain Family
PRK12469

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PRK12469: PRK12469 
RNA polymerase factor sigma-54; Provisional
Statistics
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PSSM-Id: 237109
Aligned: 25 rows
Threshold Bit Score: 498.961
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
17549890    2 VKAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALASNPFLEEVDDNTGAPPEAARPGEA--MPGTEADGATAD 79 
91778926    1 -MPSIELRTRQSLALTPRLQQSVRLLQLSSLEFQQELRTALDTNPFLEYDSTDTEDVALATTASGE--EAGALPAADTVS 77 
27376994    3 LTQRLEFRQSQSLVMSPQLMQAIKLLQLSNLDLMTFVEEELECNPLLERASDDAAGAEAPTEVDQV--SGDQLAEAQVRD 80 
187920132   1 -MPSIELRTRQSLALTPRLQQSVRLLQLSSLEFQQELRTALDTNPFLEYDSSETEDVALATATSGE--DGGALPATDTVA 77 
187925968   2 VKAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALASNPFLEEVEQEAGAQPDATRANDL--PGPADLDGSGTD 79 
186474086   1 MPPTIELRAKQTFALTPRLQQSVRLLQLSSLEFQQELRNALDTNPFLEYDPSVPEDLSAGKTADGTgaDGESLPAAERDN 80 
189348621   1 MSVTLALQMRQHLALTPRLQQSLRLLQLSSLEFQQELRQALDTNPFLEDGQGDDEVAAPDPAAEAA--APEAAP------ 72 
241665452   2 VKAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALASNPFLEEVEQEAGAQPDATRANDL--PGPADLDGSGTD 79 
295699641   1 -MPSIELRTRQSLALTPRLQQSVRLLQLSALEFQQELRTALDTNPFLEYDSSEAEDVALAGTTPTD----GEDANAPAVD 75 
300694728   2 VKAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALTSNPFLEEVEDNTGTPPEAARAGEA--MPGSEADSAAAD 79 
17549890   80 HSPPDEApletttsaiETDPaiaaSdE---FPADFGSYTSYGPAHHGDGEDSDIGEWVHATPTLREHLRQELLSYRLSER 156
91778926   78 AAEPDAMssdmqsesgGNDTlessGqDdmpGDFSGDYSSRSSTRQNGDSDGSDPAEWARSQPTLREQLHDSLRLYRLDDR 157
27376994   81 AR------------------------------DGAMTTYTEWGGGGSGDEDYNLEAFVASETTLSDHLAEQLSVAFTAPA 130
187920132  78 SAEPDSLpve----sgNNDTlesaGhDdmpGDFSGDYSSRSSTRQNGDSDSSDPAEWARSQPTLREQLHDSLRLYRLDDR 153
187925968  80 HTPSEALpletttsaiETDPalatAdE---FPADFGTYYSHGGAHHGDGEDSDIGEWVHATPSLREHLHQELRSYRLSQR 156
186474086  81 ALETSQAepaaesvaaSDDG----------GDYAGDAYGRGPSRYNGDSEAADPTEWARAQPTLHEQLHDALRLYRLDDR 150
189348621  73 ----------------ERDEvrpvDgE---LSYTAAPAPRGGSRQGEDGGDLSPGEWMAAEPSLHQHLHEALRLYPLNRR 133
241665452  80 HTPSEALpletttsaiETDPalatAdE---FPADFGTYYSHGGAHHGDGEDSDIGEWVHATPSLREHLHQELRSYRLSQR 156
295699641  76 TLAAAEPdglp-aensGSDTlesaGqDdmpADFSGDYGSRSSARQNGDGDGSDPADWARSQPTLREQLHDALRLYRLDDR 154
300694728  80 RTPPDDApletttsaiETDPaidaSdE---FPADFGSYTSYGSAHHGDGEDNDIGEWVHATPSLREHLHQELRSYRLSER 156
17549890  157 DSLLALTVVEALDDDGYLRQTLFELMPLAPVESAPTEKEMQIALALVQSLDPPGVAARDLSECLRLQIEARPADTEAeer 236
91778926  158 DRAVARFIIEALDDDGYLRQDLADLADSVDLEPELTEDELLVALRLVQSLDRPGLGARTLSECLSLQVNALPADTPG--- 234
27376994  131 QRMIGQYLIDLVDEAGYLPPDLGQ----AAERLGATQEDVEHVLAVLQEFDPPGVCARNLRECLAIQLRELDRYDPA--- 203
187920132 154 DRAVARFIIEALDDDGYLRQELSDLADSVDLEPELTEEELLVALRLVQSLDRPGLGARSLSECLLLQVNALPADTPG--- 230
187925968 157 DCLLGQTVIEALDDDGYLRQLLSELIPLAPVEPPPTEKEMQIALALVQSLDPPGVAARDLSECLRLQIEARPADTEAeer 236
186474086 151 DREVARLVIEALDDDGYLRQDLADLTDIVDIEPELTEDELLVALRLVQTLDRPGLAARSLSECLSLQLDALPADTPG--- 227
189348621 134 DREAARLVIDALDDDGYLRQEPGDLLGAADPALLLSERDLSVALRLVQMLDRPGIAARSLSECLLLQLDAIPAGTPA--- 210
241665452 157 DCLLGQTVIEALDDDGYLRQLLSELIPLAPVEPPPTEKEMQIALALVQSLDPPGVAARDLSECLRLQIEARPADTEAeer 236
295699641 155 DRAVARFIIEALDEDGYMRQSLADLADSVDLEPTLTEEELLVALRLVQSLDRPGLGARSLSECLALQINALPADTPG--- 231
300694728 157 DSLLAQTVIEALDDDGYLRQTLSELMPLAPVEPAPAEKEMQIALALVQSLDPPGVAARDLAECLRLQIEARPADTEAeer 236
17549890  237 vQEIAQDIVRSHLPRLAKRDLTHIRRAVGCDEDELREACALIRTLDPRPGLRFSQAHAGYVVPDVIVAKIKG-KWVAVTN 315
91778926  235 -REVARQIVEHHLERLARREQAELQKQIGCSAEELRVACALVRKLDPKPGNCYGRTEDNYVVPDVIVRQVRN-KWVVAIN 312
27376994  204 -----MQALVEHLDLLAKRDIASLRKLCGVDDEDIADMIDELRRLSPKPGMKFGSARLQTMVPDVYVRPAPDgGWHVELN 278
187920132 231 -RDVARQVVEHHLERLARREQAELQKQIGCSAEELRVACALVRKLDPKPGNSYGRTEDNYVVPDVIVRQVRN-KWVVTIN 308
187925968 237 iQEVAHDIVRSHLPRLAKREFTQMRRALGCTEDELRDACALIRMLDPRPGLRFSQAHAGYIVPDVIVAKIRG-KWIAVTN 315
186474086 228 -RNVAKQVVEHHLDRLARREHAELQKQIGCDAEELRVACALVRKLDPKPGNSYGRADDNYIVPDVIVRSVRN-KWVVTVN 305
189348621 211 -LPEAKAIAREHLERLARRETAEIQRRIGCNQQTLQAACALVRGLDPRPGNHYGSTRGDYVVPDVIVRQVRD-EWVVTIN 288
241665452 237 iQEVAHDIVRSHLPRLAKREFTQMRRALGCTEDELRDACALIRMLDPRPGLRFSQAHAGYIVPDVIVAKIRG-KWIAVTN 315
295699641 232 -RDVARQIAEHHLERLARREQAELQKQIGCSAEELRVACALVRKLDPKPGNCYGRAEDNYVVPDVIVRQARN-KWVVSIN 309
300694728 237 vQEIALDIVRSHLPRLAKRDLTHIRRAVGCEEDELREACALIRTLDPRPGLRFSQAHAGYIVPDVIVAKIKG-KWVAVTN 315
17549890  316 PAVAPCARINKVYAELFAQTRGH--HRTPLAHQLQEARWLIRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMRPLVLRD 393
91778926  313 PAVQPRARIHRMYAELFAQSAGA--SRSPLAQQLQEARWLIRNAQQRFDTIQRVAECIVAHQKAFFQYGEIALKPMVLRD 390
27376994  279 SDTLPRVLVNQTYYSKLSKKIGKdvDKSYFNDALQNATWLVRALDQRARTILKVATEIVRQQDGFFTLGVAHLRPLNLKA 358
187920132 309 PAVQPRARIHRMYAELFAQSAGA--SRSPLAQQLQEARWLIRNAQQRFDTIQRVAECIVAHQKAFFQYGEIALKPMVLRD 386
187925968 316 PAVAPCARINKVYAELFAQTRGY--HRTPLAHQLQEARWLIRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMKPLVLRD 393
186474086 306 PAVLPRARIHRMYAELFAQSAGA--SRSPLAQQLQEARWLIRNAQQRFETIQRVAECIVAHQKPFFQYGEIALKPLVLRD 383
189348621 289 PAVLPRARLHERYATLFAQSSGE--RDSPLGQQLQEARWLIRNVQKRFDTIQRVGECIVARQRDFFRYGEIAMKPLVLRD 366
241665452 316 PAVAPCARINKVYAELFAQTRGY--HRTPLAHQLQEARWLIRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMKPLVLRD 393
295699641 310 PAVQPRARIHRMYAQLFAQSAGA--SRSPLAQQLQEARWLIRNAQQRFDTIQRVAECIVAHQKAFFQYGEIALKPMVLRD 387
300694728 316 PAVAPCARINKVYAELFAQTRGH--HRTPLAHQLQEARWLIRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMRPLVLRD 393
17549890  394 VAEELGLHESTISRATGNKFMATPRGIFEFKYFFSRQLATDTGGAC-SAASVRALLKEMIEAEDAQAPLSDVSLAKMLAE 472
91778926  391 VADELGLHESTISRATGNKYMATPRGIFEFKHFFPRELGTESGGTC-SAAAVRALLKEMIAAENTRDPLSDVTLAKMLAD 469
27376994  359 VAEAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIPSADGGEAhSAEAVRHRIKQLIESEEPSAVLSDDAIVERLRV 438
187920132 387 VADELGLHESTISRATGNKYMATPRGIFEFKHFFPRELGTESGGTC-SAAAVRALLKEMIAAENTHDPLSDVTLAKMLAD 465
187925968 394 VAEELGLHESTISRATGNKYMATPRGIFEFKYFFSRQLATDTGGAC-SAASVRALLKEMIEAEDADAPLSDVSLAKMLAE 472
186474086 384 VAEELGLHESTISRATGNKYMATPRGIFEFKHFFPRELGTESGGTC-SAAAVRALLKEMIAAENTRDPLSDVALAKMLAD 462
189348621 367 IAEELDLHESTVSRATGNKYMATPHGTFEFKHFFPRKLEAAGRGVC-SASAAKVLIRDMIAAERHTDPLSDVALTQNLAG 445
241665452 394 VAEELGLHESTISRATGNKYMATPRGIFEFKYFFSRQLATDTGGAC-SAASVRALLKEMIEAEDADAPLSDVSLAKMLAE 472
295699641 388 VADELGLHESTISRATGNKYMATPRGIFEFKHFFPRELGTESGGTC-SAAAVRALLKEMIAAENARDPLSDVTLAKMLAD 466
300694728 394 VAEELGLHESTISRATGNKFMATPRGIFEFKYFFSRQLATDTGGAC-SAASVRALLKEMIEAEDAQAPLSDVSLAKMLAE 472
17549890  473 QGVIVARRTVAKYRGLMRIAPAELRRQI 500
91778926  470 QGVLVARRTVAKYRHLMKVPPAELRRQV 497
27376994  439 SGIDIARRTVAKYREAMRIRSSVQRRRD 466
187920132 466 QGVLVARRTVAKYRHLMKVPPAELRRQI 493
187925968 473 QGVIVARRTVAKYRGLMRIAPAEMRRQV 500
186474086 463 QGVLVARRTVAKYRHLMKVPPAELRRQV 490
189348621 446 RGILLARRTVTKYRQAMKIPPAELRRRD 473
241665452 473 QGVIVARRTVAKYRGLMRIAPAEMRRQV 500
295699641 467 QGVLVARRTVAKYRHLMKVPPAELRRQL 494
300694728 473 QGVIVARRTVAKYRGLMRIASAELRRQV 500
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