Conserved Protein Domain Family
PRK09648

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PRK09648: PRK09648 
RNA polymerase sigma factor ShbA
Statistics
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PSSM-Id: 236607
Aligned: 43 rows
Threshold Bit Score: 244.879
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
21223148    6 APPDQGTVGGLVHRAVDGDEQATHDLLAHVHPLALRYCRTRLSRLPGDArhfVEDLAQEVCVAVLLALPRYKDTGRPFEA 85 
54025718   20 SRRVAAEVEQLIGPAAAGDQRAVSDILRAVHPLVRRYCGARLGNTAHLQv-tADDVVQEVLLATVKAIPRYRDQGKSFLA 98 
226361527   3 ELDARAELERLAPYAAAGDEDAVEEVLRIAHPLVHRYCTTRLESVDHPHt-tADDVTQDVCLALMSALRTYRNQGKSLLS 81 
290958080   2 RDDETTAIGALVHRAVDGDEQATHDLLAHVHPLALRYCRTRLSRLPGDArhfVEDLAQEVCVAVLLALPRYKDTGRPFEA 81 
182436551   2 RDDETTVIGALVHRAVEGDAQATHDLLAHVHPLALRYCRSRLNRLPGDArhfVEDLAQEVCVAVLMALPRYKDTGRPFEA 81 
29831542    2 RDDETTVIGALVHRAVDGDEQATHDLLARVHPLALRYCRARLSRLPGDArhfQEDLAQEVCVAVLLALPRYKDTGRPFEA 81 
271962702  24 GVAHRDDLKDLTSLAVQGDRTAIETLIAQLRPMVVRYCRARLGRVSGQYh-iADDVAQEVCIAVLSALPRYRDMGRPFAS 102
297562953   8 GQRDHTGLNHLGSLAVRGDDGAMDSLLREVRPMVVRYCRARLARVSGLAh-ySDDVAQEVCIALLSAIPRYQDRGRPFAA 86 
269128451  12 APSDEGDLGDLTALAVQGDPGAIEVLLSQVRPMVVRYCRARLGRISGHYh-iADDVAQEVCIAVLSALPRYRDMGRPFAS 90 
72162996   26 PRADDAELNHLTSLAAQGDDGAVDSLIREVHPMVVRYCRARLSRVPGSTh-dFDDVAQEVCLALLSALPRYRDMGRPFAS 104
21223148   86 FVFAIAAHKVADLQRAAMRhpgSTAVPSDEMPERPDDSLGPEERALLNSDAAWAKKLLANLPENQRELLLLRIAVGLTAE 165
54025718   99 FVYGIAANKVADAFRRSQV---HPAYPMAEVPDAASPEAGPEEWALALERRAATRELMKVLAPAHREVLVMRIVLGWSAA 175
226361527  82 FIFGIAAHKVSDARRRATRlsvPQTARAAAAHHVVDVEDGPEHHVLRDELRGEMGLLVETLPVRHQQILFMRVIVGMSAE 161
290958080  82 FVFAIAGHKVADLQRAAMRhpgSTAVPSDEMPERPDDSLGPEERALLSSDAEWAKKLLANLPENQRELLLLRIAVGLTAE 161
182436551  82 FVFAIAGHKVADLQRAAMRhpgSTAVPSDEMPERPDDSLGPEERALLSSDAAWAKKLLANLPENQRELLVLRVAVGLTAE 161
29831542   82 FVFAIAAHKVADLQRAAMRhpgSTAVPSDEMPERPDDSLGPEERALLSSDAEWAKKLLANLPENQRELLLLRIAVGLTAE 161
271962702 103 FVFGIASHKVADALRSSVR----SAVPTQDLPDGPDEGPGPEETVVRYIEAEHARRLLSRLPDNQRQLLMLRVVSGLSAE 178
297562953  87 FVFGIAAHKVADTLRGAGR---VETVPTDSVPERPDEGPGPEESAVRVIEAQRARELLDELPEQQRKLLVMRVIAGLTAD 163
269128451  91 FVFGIASHKIADALRSAVR----SAVPTEDLPDGPDDRPGPEETVVRYSEAERARDLLTRLPEHQRELVLLRVVAGLSAE 166
72162996  105 FVFGIAAHKVADALRGRTR---AD-VPTDSVPDHPDESPGPEESAVRIVEAEQARELLSTLPEQQRRLLSLRVIAGLSAD 180
21223148  166 ETGQMLGMSPGAVRVAQHRALSRLRALAEQ 195
54025718  176 QTAEAIGTSPGVVRVMQHRALNKLRAQLEL 205
226361527 162 QTARVLDTTPGAVRVAQHRALNHLRARIGH 191
290958080 162 ETGQMLGMSPGAVRVAQHRALSRLRALAEQ 191
182436551 162 ETGQMLGMSPGAVRVAQHRALSRLRALAEQ 191
29831542  162 ETGQMLGMSPGAVRVAQHRALSRLRALAEQ 191
271962702 179 ETGNVLGMSPGAVRVAQHRALARLRAMAEL 208
297562953 164 ETGHVLGMSAGAVRVAQHRAIARLRQVAVA 193
269128451 167 ETGNVLGMTAGAVRVAQHRALARLRAMASE 196
72162996  181 ETGHALGMSPGAVRVAQHRALARLRRAAHR 210
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