Conserved Protein Domain Family
ligD

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PRK09633: ligD 
DNA ligase D
Statistics
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PSSM-Id: 182006
Aligned: 11 rows
Threshold Bit Score: 1021.13
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
52079887    2 GITMQPVLTTSAPSGGNWRYEVKYDGYRGLLKIAATGeVSLISRNSQPLENTFPEISEFAKSMIETLKEHLPITIDGEIV 81 
52785259    2 GITMQPVLTTSAPSGGNWRYEVKYDGYRGLLKIAATGeVSLISRNSQPLENTFPEISEFAKSMIETLKEHLPITIDGEIV 81 
288556687   1 ---------------MVWENET----------------PQLYSRNEKELTANFPEIIEWCRSNYEQVKEYLPLILDGELV 49 
154685751   2 VLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESG-VTLTSRNGQTLTNQFPEITAFAARCFQHMKDRFPITLDGELV 80 
305674060   2 ALTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSEG-VTLTSRNGLELTSTFPEITQFAKTAFQHMEKDLPLTLDGEIV 80 
15614772    1 MKPMLLQTTTDLPTGDNWRYEVKYDGFRTILFWTKET-IRLESRNERLLTDQFPEIHDFCQRISNKVEAWLPITIDGELV 79 
23100489    1 ---MKPIASTEIPVGDEWIYEVKYDGFRCKLIWSVANkITLISKNKHNITKKFPEIIQWCENNYEFFKTALPLEFDGELV 77 
157692443   1 MKPMRLTAAHDVPTGADWVYELKYDGFRVILTWDQNE-IHLESRAGKRLNEQFPEVIEQCEQLRDHFAPLLPLTFDGELV 79 
16078405    2 AFTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSSG-VTLTSRNGVELSSTFPEITQFAKTAFQHLEKELPLTLDGEIV 80 
56963366    1 MKPMKLTETTAFPQSTGWVAEPKYDGYRCLVSITDTS-IELISRNGRLLNHAFPEVVSAFEERRTKLSNELPLVLDGELV 79 
169828560   1 MKPMLLTEANEIPIGDDWLYETKYDGFRCLLIWDEQP--ILISRNGRNLNHSFPEIIDYCHQIHASVKAFLPLIFDGELV 78 
52079887   82 SLTNRFRSRFEYVQKRGLSKKAELIAQAAAKKPCQYLAFDLLVFNGESLTSLPYTERKRMLFDLMKELGLPMAPDPMAHA 161
52785259   82 SLTNRFRSRFEYVQKRGLSKKAELIAQAAAKKPCQYLAFDLLVFNGESLTSLPYTERKRMLFDLMKELGLPMAPDPMAHA 161
288556687  50 HLTNSYQSEFTLVQQRGKLRTIESITRHSRLYPMNFIAFDLLKISGTSLMENPLFTRKKQLDKLCKVLGITKDTSP---- 125
154685751  81 YLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFDLLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEE 160
305674060  81 CLVNPCRSDFEHIQVRGRLKRPDKIQESANARPCCFLAFDLLERRGEDISSLSYLDRKKSLYDLMSAAKFPASPDPYAKE 160
15614772   80 HLVSPYRAHFAPIQTRSFMRKHETIAASSIKTPATLLAFDILELKGKTLVDLPYDERKKQLKALLKAIDVPLEPTIQSNA 159
23100489   78 ILNHRYQANFAQIQIRGRLQSTDRIEKKANLRPATLMVFDLTKLKGKKLYQSNLSLRKKYLDQLMQDIR--------GDG 149
157692443  80 FLLDEQQSDFARVQQRGRLKNKEAIKLQAERFPCHLIAFDLLRCKGKSLIDLPLMERKTQLQQVFKAAKLPSSVQLEHPS 159
16078405   81 CLVNPCRADFEHLQVRGRLKRPDKIQESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKE 160
56963366   80 CLLNGYASHFPAVQTRSRMSNVHVIEKEMVSRPCQWIAFDIL-----NQPNVPYRERRKQLLSFCKRADIPALTPLGGVP 154
169828560  79 YLSNPYKSEFSVVQQRGRMQNQDVIAKHAQAFPMRLLVFDMLMIKGESFSNRYLKTRKEQLAKLAAKVKLPNVDDQDGK- 157
52079887  162 RIQYIPDTSDFHDLWKAVKRFDGEGIVAKKKDSRWAENKKTAEWLKLKNYKKAAVFMTGYNMANRYLTIAVY-DRGQIKE 240
52785259  162 RIQYIPDTSDFHDLWKAVKRFDGEGIVAKKKDSRWAENKKTAEWLKLKNYKKAAVFMTGYNMANRYLTIAVY-DRGQIKE 240
288556687 126 -LQIIETFKKGEELFDFVTEHNGEGLVAKKKTSTY-RSTRSKDWLKIKNWRYVQLIVTAYDKGNGYFEGSVL-KDGELTA 202
154685751 161 AIQYIPEHTDFDALWDKVVRHDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVL-KDGTAVP 239
305674060 161 TIQYVPCYDYFDPLWEMVTKYDGEGIVAKKTNSKWLERKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVL-KNGVMTP 239
15614772  160 CLQMIPAQTDGQALWQAVELHHGEGVVAKDRFSDWTEGKRTNRWLKKKNFRQVTVFLTAYDPVNGYFHFAVY-RDGTSVE 238
23100489  150 RIRCVESFTSVSKINEIVYAAKSEGVVAKRKKSIYQKGKQHQSWFKIKNWRLIHGILTAYNPSNGYFTVSVL-ENNQPVH 228
157692443 160 LLQLIHTDTNSEHMKKLMTTYLAEGLVAKKRTSKWHDHTRSKEWLKVKNWRYVSVIVTRFDKENGYFQGCIY-QDHHLTE 238
16078405  161 TIQSIPCYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVL-KNGIMTP 239
56963366  155 TLGVVESTSAIQALLTTVKRYNGEGIVLKKQLSPYNQNIRSKDWLKLKHYRLVPVLVTFFDATNGYFHGSVYhQQGALNE 234
169828560 158 VIQIVQAKEESNILWQAIKVYNGEGMVAKKKTSKWLDNTRSSHWLKIKNWRYVTVIVTQYDHSNGYFQGSIY-DGGNLRE 236
52079887  241 VGSVSHGLGEQERNAILSIVKQYGTETKPGEYTIDPSICMTVHYLTIHYGTLREVSFVSFEFDMAWENCTYNRLLLHSRN 320
52785259  241 VGSVSHGLGEQERNAILSIVKQYGTETKPGEYTIDPSICMTVHYLTIHYGTLREVSFVSFEFDMAWENCTYNRLLLHSRN 320
288556687 203 VTHFKHGMKDEEYTTLTALFKENGEKRGKETWTLPPSIVVNIASIGFDGKQLREPQFDSFLMDAEPDGCTWNSLQRQLHP 282
154685751 240 IASVSHGMQAEEKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQFEMDWTECTYQQLILHSKT 319
305674060 240 IASVSHGMRDEEKNAIREIMEQHGHKTSSGEFTLEPSICATVQYLTILQGTLREVSFVGFEFHMDWTECTYAQVIRHSKT 319
15614772  239 VGNVTHGFEDHERETLIAFMKQNGMKKGKR-YVLEPSVCFDVDCIDFDGKHLREPMFHRFRLDVKPAQCTWKSLQRQLAP 317
23100489  229 IGKCKHGLEKDASQTVQKLFQEQG-EFKDGIYYLPPAITSTIHTLDLYDEELREPEFKHITSSIAYSECTLDKLQLDMAQ 307
157692443 239 VVQFKHGFSKEEEQTLRTLFQTNGKQTGASAYEIPPSIVASIACISFDGSALREPRFSSFLLDTDPTACTFQQMLKQLYP 318
16078405  240 IASVSHGMRDEEKSAIREIMEQHGHQTPSGEFTLEPSICAAVQYLTILQGTLREVSFIGFEFQMDWTECTYAQVIRHSKP 319
56963366  235 VAIFKHGLLPDDAKTLANFFRTKGTAEKNG-FRLAPSIVVELACIGLSGGQLREVSFVRFLHHADPNDITMTTLFHGLYP 313
169828560 237 VVTFKHGMKEEEHQTLVAFFQAQGQRKKEL-WELEPSICVDIACIDFDGSKLREPKFHAFRLELTPDICQWQHMQRQLFP 315
52079887  321 VHPDLQLTSLDKVIFPKSDKTKADYIGYLNEIGDFLLPFLDNRALTVIRYPHGS----GGESFFQKNKPDYAPEFITSIR 396
52785259  321 VHPDLQLTSLDKVIFPKSDKTKADYIGYLNEIGDFLLPFLDNRALTVIRYPHGS----GGESFFQKNKPDYAPEFITSIR 396
288556687 283 IPKQVEITHPDKPVWPSIHLVKDDYLLYLQKAAPFFLPFLQDRLLTVIRFPHGA----DDESFYQKNTPDYAPSFIQTAV 358
154685751 320 LPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLKDRAVTVIRYPHGA----PGESFFQKNKPDYTPDFVSSVF 395
305674060 320 VHPKLQFTSLDKIIFEKNKKTKEDFIQYTIEVSDYLFPFLKNRAVTVIRYPHGS----RSESFFQKNKPDYAPDFVQSFY 395
15614772  318 LPPQVEITHPDKPLWPRQMIQKIDYLYYLQEVAPAMLPFLIDRPLTVIRYPHGVrsntEREAFYQKNCPDYAPSFVKTVR 397
23100489  308 LPHSIDISNTDKYLWPN-NYTKQDLLVYIREISPWMLPFLRQKALTIIRCPDGI----TKESFFQKNLPDYAPDFLSSTS 382
157692443 319 LPTVIEITHPEKPIVPALHLNKADYLLYLRQAAPYLLPFLRERRLTLIRFPHGA----GDEFFYQKSTPDYAPDYVLTDQ 394
16078405  320 VHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDYLLPFLKNRAVTVIRYPHGS----RSESFFQKNKPDYAPDFVQSFY 395
56963366  314 LPDIVETTSLDKPLWEQ--VTKADYLHYLQAVMPFMLPFLYQRALTVIRFPHGTf---ANERFYQKHIPNYAPAYVNSAW 388
169828560 316 IPETVPITHPDKPVWPEIGVTKDHYLSYLQSVSPYLLPFLQDRPLTLIRYPHGV----PGESFYQKSRPDKLPDFVGTAM 391
52079887  397 DDEHEHIICSDYSVLLWLANQLALEFHIPFQTVDTAHPTEIVFDLDPPSKSEFPLAVRAAKELHRLFDQLGLLSFPKLSG 476
52785259  397 DDEHEHIICSDYSVLLWLANQLALEFHIPFQTVDTAHPTEIVFDLDPPSKSEFPLAVRAAKELHRLFDQLGLLSFPKLSG 476
288556687 359 DEDIEYILCNDLKSLLWLGNQLALEFHIPYQTIHQTKPAELVFDLDPPSVDEFGLAVQAALQMKEIFDQFHLTSYVKTSG 438
154685751 396 DGSHEHIVCSSIPSLLWLANQLALEFHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSG 475
305674060 396 DGSHEHIVCEDMSTLLWLANQLALEFHVPFQTIQSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLFDSFGITSFPKLSG 475
15614772  398 LDEIRYIVCNDIQTLVWLGNQLALEFHIPYHPVPYTKPSEIVFDLDPPSISQFSLAVKAAQLMKNMFDALKLQSFVKTSG 477
23100489  383 AQE-NYIVCNHLRSIVWLANHGSIEYHIPFQRIGHVTPLEIVFDLDPPDREHFKLAVHAANLLKHILDELELVSFVKTSG 461
157692443 395 ADDIAYTVCNDPQTLLWLGNQLAMEFHIPFETRDTDRPTEIVFDLDPPSVNEFHLAIEAAKRIKTLLDGLFLTAFIKTSG 474
16078405  396 DGSHEHIVCEDMSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLLDSFGITSYPKLSG 475
56963366  389 LEDICYILCNNPETLIWLGNQLALELHIPFQTIESSKPDEIVFDLDPPSQDQFGLAQEAALDMKQIFNRFQLPFFCKTTG 468
169828560 392 MDEIDYMVCNNLETLLWLGNQLALEWHIPFQTRQTMNPTEIVFDLDPPSTDHFSLAIAGALDLKGIIDYFQLQSFVKTSG 471
52079887  477 NKGIQIYIPISKNAFTYEETRLFTSFAASYCVSLFPDLFTTERLIKNRGGKLYIDYVQHAPGKTIICPYSTRGNELGTVA 556
52785259  477 NKGIQIYIPISKNAFTYEETRLFTSFAASYCVSLFPDLFTTERLIKNRGGKLYIDYVQHAPGKTIICPYSTRGNELGTVA 556
288556687 439 NKGLQLYLPLPEEAFSYKQTRAFSEFVSIYLCEQNPEIFTIERLKKNRGGRLYIDYIQHDAGKTIIAPYSTRGHRRGLVA 518
154685751 476 NKGIQLYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPYSTRGNELGTVA 555
305674060 476 NKGIQLYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPYSTRGNDLGTVA 555
15614772  478 GKGLQLYLPLPDNTFTYDDTRLFSKTVCELLCSQFPEDFTTERLKKHRGQRLYLDYLQHDEGKTIVAPFSPRGNEGGFIA 557
23100489  462 NKGLQVYIPIREGSMTYDETFLFTEAIAKTLEKSYPNDFTTERMKKNRHNRLYIDYVQHGKDKTLIAPYSPRMTKEGTVS 541
157692443 475 GKGLQVYIPLKKNAFTYEETRTFTAFICQFLCEQAPELFTLERLKKKRGNRLYLDYIQHDAGKTIIAPYSPRGNELGLVA 554
16078405  476 NKGIQLYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHCKLYLDYLQHAEGKTIICPYSTRGNELGTVA 555
56963366  469 GKGLQVHIPLEKQTLTYEETGRFMKFVADFLCQQKPGKYTTERLKKKRRNRLYIDYVQHAYNKTVIAPYSMR--ETGFAA 546
169828560 472 GKGLQLYIPLPANKFTYEEVRVFTEFACRFLCQQKPHLYTIERLKKNRHNKLYLDYVQHAEGKTIIAPYSTRGNELGLVA 551
52079887  557 APLFWDEV-HSDLSPLNFTMEAVVKRTKELGCPFESFFRQPQD--KQIKAILDHLKENN 612
52785259  557 APLFWDEV-HSDLSPLNFTMEAVVKRTKELGCPFESFFRQPQD--KQIKAILDHLKENN 612
288556687 519 TPLYWDEV-GDKLTPDDFTIPRVIERLRSEGDPFRSIRENLDEqgEAFAAVLGELKKLG 576
154685751 556 APLYWSEV-NSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQD--GPLSIVLEQIKRKS 611
305674060 556 APLYWHEV-QPSLTPAMFTIDTVVDRIKKQGCPFFDFYRNPQD--EPLNAILHQLKKKS 611
15614772  558 TPLRWEEV-TNTLSPDQFPMKAVLERYRNGIQPFATFAEAKKT--QPFADVLKKFKR-- 611
23100489  542 TPLYWNEV-NNELDPTHFTIGNVINRVREIGCPFANYHDMHEQ--QPMKKMLRLVRG-- 595
157692443 555 TPLEWDELrQDGLHPSLFTMPSVIERLKEKGDPFRRMRHLVND--DTFRQVLHRLEDMI 611
16078405  556 APLYWHEV-QSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQD--EPLSAILHQLKKKS 611
56963366  547 VPLREDELaSPTLSPQQFSYVDVLRRIQQFENPFIGYERERVSk-ERFIQLLDEIGI-- 602
169828560 552 TPLHWEEV-NDDLKPYYFSIPAVMERMKKISNPFKYFREVGEQ--QDFQAVLDRINE-- 605
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