Conserved Protein Domain Family
PRK09606

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PRK09606: PRK09606 
DNA-directed RNA polymerase subunit B''; Validated
Statistics
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PSSM-Id: 236587
Aligned: 50 rows
Threshold Bit Score: 682.061
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
288561073   1 MNNETWGLVDSFFDK----------YDIVDHHIKSYNDFVENRIQNIIDITEPITIENEKGnyTLRTGKLTIEKPFTKEA 70 
297619554   1 --MKSRVIVDAFFEE----------NNLVKHHIDSFNSFVENKVQKIISEVGGVNTEIKSGy-RVEFGTVAISKPVNKEA 67 
150401220   1 --MESRIIVDEFFKE----------NSLVEHHINSYNKFVENSIQKVIDEAAPIEAEVKGGf-KVKFGKVRVGKPINKEA 67 
15897173    6 TIDERWRVIEAYFKS----------KGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGL--KVRLGKIRIGKPRVRES 73 
20094125    2 SEEDYLALLEGYLRRneellgdvktHPLIAHHFLSYHWLIDEGLQQLIEQMEPIEPEVEGAsyRIEFERIEVGEPSSIEP 81 
289193123   1 ----MRELVDAYFKE----------HGLIDHQIESYNDFVENRLQKIIDEVGYIETEITGGy-KVKLGKIKVGKPVIKEA 65 
296109333   1 --MDKYTLIDAYFKE----------HSLVEHQLESYNDFVENRLQKIVDEIGYVDTDIPEGf-KVKFGKIKLGKPIIKEA 67 
15669229    1 -MAIMRELVDAYFKE----------HGLIDHQIESYNDFVENRLQKIIDEVGYIETEITGGy-KVKLGKIKVGKPVIKEA 68 
261403647   1 ----MREMIDAYFKE----------HGLIDHQIESYNDFVENRLQSIIDEVGYIETEISGGy-KVKLGKIKIGKPVIKEA 65 
256811202   1 ----MRELVDAYFKE----------HGLIDHQIESYNDFVENRLQKIIDEVGYIETEISGGf-KVKLGKVKIGKPVIKEA 65 
288561073  71 DGSKSMIYPTEARLRNLNYSAHMYLEMALHDNNSDEe---------eELENVYIGELPLMLKSSICHLHGLSDEELVKRG 141
297619554  68 DGSVKPITPMEARIRNLAYSAPMYLEIVPFVGENEEek-------klSPLTVYMGELPVILGSDICHLKGKSPEELIEYG 140
150401220  68 DGSVKEIYPVEARIRNLSYSAPLYLEITPIMGGGEDeegnkyeveegETVEAYIGELPVMLGSIICHLNGKSEDELVKMG 147
15897173   74 DRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEA-----------EPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIG 142
20094125   82 DGARRKIYPMEARLRNMLYSAPLYAEIVMYEDGEEV-----------ERDNVYVGELPVMVRSKVCNTYGLSEEELIEVG 150
289193123  66 DGSIRPITPMEARIRDLTYSVPLYLEMTPIIGEGENei-------vgETVEVYIGELPVMLGSKICHLYGKSREELIELG 138
296109333  68 DGSIREITPMEARIREITYSVPIYLEMTPIYGKEGEer-------egETLDVYIGELPVMLGSKICLLYGKSEEEIIKMG 140
15669229   69 DGSIRPITPMEARIRDLTYSVPLYLEMTPIIGEGEDar-------egETVEVYIGELPVMLGSKICHLYGKSREELIDLG 141
261403647  66 DGSSRKITPMEARIRDLTYSVPLYLEMIPIIGEGEEer-------egDVVEVYIGELPVMLGSKICHLYGKSREELIDMG 138
256811202  66 DGSIRPITPMEARIRDLTYSVPLYLEMTPIIGEGEEev-------vgETVEVYIGELPVMLGSKICHLYGKSKEELIELG 138
288561073 142 EDPKDPGGYFIVNGSERAVVTMEEIAPNKIILERID-EIEDRHAKAIVTSIKSGFRARITLEykkpRKSGVFLRISFPYV 220
297619554 141 EDPEDPLGYFIVNGSEKAVVAQEDLIPNRILCEKVE-KNNKMVDVAKVFSTRHGFRALCAVE----RNPDGLLNVSFPGM 215
150401220 148 EDARDPMGYFIVNGSEKAVVAQEDLIPNRILCEKVE-KTGKPVYIAKVFSTRHGFRALCAVE----KHDDGRLNVSFPGM 222
15897173  143 EDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGK-TGSNITHTAKIISSTAGYRVPVTIE----RLKDGTFHVSFPAV 217
20094125  151 EDPKDPGGYFIINGSERVLMSLEDIAPNRRVNEKIReRGVLDEVRSRVYSRGERYRGPVDV-----IDRKGRLVIDMPAV 225
289193123 139 EDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAE-RSGKLVDVAKVFSTRHGFRALCTVE----RHPDGLLYATFPGM 213
296109333 141 EDPRDRFGYFIINGTEKVLISQEDLIPNRIICEKTE-KSGKLVDVAKIFSTRSGFRALCSLE----KYPDGLIYANFPGV 215
15669229  142 EDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAE-RSGKIVDVAKVFSTRHGFRALCTVE----RHPDGLLYATFPGM 216
261403647 139 EDPEDPLGYFIINGTEKVLITQEDLIPNRILCEKAE-RSGKIVDVAKVFSTRHGFRALCTVE----RHPDGLLYATFPGM 213
256811202 139 EDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAE-RSGKIVDVAKVFSTRHGFRALCTVE----RHPDGLLYATFPGM 213
288561073 221 PGEIPLVILLRALGLSTDGEIISKISDDFNFQMYIADDLqvseKDLKLDSDLllslsneerdeylqkAAIKYIGNRVAKG 300
297619554 216 PSNIPLVILMRALGAQSDRDIIELISDEPSVIMQLVANLqevrEEHSINTRE---------------DALEHIGKRVAPG 280
150401220 223 SGNIPLVILLKALGAENDSAVFKIISEDPAVSMQLIANIletrEEHQVITRE---------------DALEYIGKRVAPG 287
15897173  218 PGKIPFVILMRALGILTDRDIVYAVSLDPEVQNELFPSLe---QASSIANVD---------------DALDFIGSRVAIG 279
20094125  226 YRKFPVVILLRALGL-TEEEIMEGVG--PEFATIMAEQMrv-lVKEEIGSQE---------------DALEYIGRLSRPD 286
289193123 214 PGQIPLVILMKALGAETDKDIIEAINDERFFMEIVL-NIqeirEEHNINTPE---------------EALEFIGKRVAPG 277
296109333 216 TGSVPFVILMRALGAETDREIIEAVNDERFVMEILL-NIqeirEEYNINTQE---------------EALDFIGKKIVPN 279
15669229  217 PGQIPLVILMKALGAETDKDIIESIDDERFFMEIVL-NIqeirEEHNINSPE---------------DALEFIGKRVAPG 280
261403647 214 PGQLPFIVLMKALGAETDKDIMDAIDDERFFMEIVL-NIqeirEEHNINTPE---------------DALEFIGKRVAPG 277
256811202 214 PGQIPLVILMKALGAETDKDIIEAIDDERFFMEIVL-NIqeirEEHNINTPE---------------DALEFIGRRVAPG 277
288561073 301 MTEEYRIKRAEDVIDRYLLPHMG-IE--------SDKRYDKAIYLAEMTEMLLQVIEGQ---REPHDKDHYTNKRLRVSG 368
297619554 281 QPREYKLKRAETILCSYLLPHLG-VE--------PADMRTKAKYLGRMAKNSIELYLGL---RVEDDKDHYSNKRLKLAG 348
150401220 288 QPKEYRLKRAETILCNYLLPHMG-VK--------KENLFEKCIYLGRMAKNAIELYLGL---RVEDDKDHYANKRLKLAG 355
15897173  280 QKRENRIEKAQQIIDKYFLPHLG-TS--------AEDRKKKAYYLAYAISKVIELYLGR---REPDDKDHYANKRLRLAG 347
20094125  287 ESREERIKRGKEVLAKYFLPHIAeVDdldddeklKEVFRKKADEVLKMVREVLELKYRRvkvKSVRDRDHYANKRIKLAG 366
289193123 278 QAKDYRLKRAETVLCNYLLPHLG-VT--------KEDFPKKIRFLGIMTRNALELYFGY---RGEDDKDHYAYKRAKLAG 345
296109333 280 QTKEKRIARAKSVLCNYLLPHLG-NT--------EESFYKKIKFLGIMARNVLELHFGY---RTEDDKDHLAFKRVKLAG 347
15669229  281 QAKDYRLKRAETVLCNYLLPHLG-VT--------KEDFPKKIRFLGIMARNALELYFGY---RGEDDKDHYAYKRAKLAG 348
261403647 278 QAKDYRIKRAETILCNYLLPHLG-VN--------KEDFPKKIKFLGIMARNALELYFGY---RKEDDKDHYAYKRAKLAG 345
256811202 278 QIKDYRLKRAETVLCNYLLPHLG-VE--------KEDFPKKIRFLGIMARNALELYYGY---RGEDDKDHYAYKRAKLAG 345
288561073 369 DLTEDLFRVAFSSLTRDMSYRLERSLSRGKELSIKQAVRSDVLTENIKHAIATGNWVGG----RAGVSQLLDRVSYMATL 444
297619554 349 DLMEDLFRNSFNQLVKDIKYQLERQSIRNKEPSIQAAVRSDVLTERMRHAMATGNWVGG----RTGVSQLLDRTSYLATT 424
150401220 356 DLMEDLFRYSFNQLNKDMKYQLERQAIRNKSPSIQAAVRSDVLTERIRHAMATGNWVGG----RTGVSQLLDRTSYLATV 431
15897173  348 DLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGG----RTGVSQLLDRTNWLSML 423
20094125  367 DLLYEAYEYAFQQLAREMRYQFERAYSRGREPTIRYIVRPDKVTDHIRSCMSTGTWRTGhyrpRTGVSQILERYTWMSTM 446
289193123 346 DLMEDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTWVGG----KTGVSQLLDRTSYLATN 421
296109333 348 DLLEDLFRDAFSALVKDMKYQLERQCTRNKEPSIKAAVRGDLLTDRINSAMATGTWIGG----RTGVSQLLDRTSYLATN 423
15669229  349 DLMEDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTWVGG----KTGVSQLLDRTSYLATN 424
261403647 346 DLMEDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTWVGG----KTGVSQLLDRTSYLATN 421
256811202 346 DLMEDLFRYAFNQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTWVGG----KTGVSQLLDRTSYLATN 421
288561073 445 SHLRRVVSPLTRSQPHF----EARDLHPTQFGKICPNETPEGPNCGLVKNLALMCKISEG-FDPEDIVNIISTMDNVDM 518
297619554 425 SQLRRVVSPLSRSQPHF----EARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKVTTD-QPDDSVIDLLSSMGISRE 498
150401220 432 SQLRRLVSPLSRSQPHF----EARDLHATQWGKICPSETPEGPNCGLVKNIAVMCEITTQ-EQDDKIIDLLKESGYVKS 505
15897173  424 SHLRRVISSLARGQPNF----EARDLHGTQWGRMCPFETPEGPNSGLVKNLAV--------NGSNCCTE---------- 480
20094125  447 SHLRRIRAATELGVGKWsipkEARYLHPTHMGRLCPNETPEGANCGAIKNLALYAEVVHKdADEDEVIEILEEIGLETE 525
289193123 422 SQLRRIVSPLSRSQPHF----EARELHGTHWGKICPSETPEGPNCGLVKNFAIMCKVTRE-EDDSKVIELLKSFGINLS 495
296109333 424 SQLRRIVSPLSRSQPHF----EARELHGTHWGKICPSETPEGQNCGLVKNFAIMAKITKK-EDEKEVIEFLKSIEIMKF 497
15669229  425 SQLRRIVSPLSRSQPHF----EARELHGTHWGKICPSETPEGPNCGLVKNFAIMCKVTRE-EDDSKVIELLKSFGINVS 498
261403647 422 SQLRRIVSPLSRSQPHF----EARELHGTHWGKICPSETPEGPNCGLVKNFAIMCKVTRE-EDDSKIIDLLKSFGAKIS 495
256811202 422 SQLRRIVSPLARSQPHF----EARELHGTHWGKICPSETPEGPNCGLVKNFAIMCKVTRE-EDDSKVIELLKSFGINEY 495
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