Conserved Protein Domain Family
PRK08241

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PRK08241: PRK08241 
RNA polymerase subunit sigma-70
Statistics
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PSSM-Id: 236196
Aligned: 68 rows
Threshold Bit Score: 390.452
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
256392370  26 ARARAGDHHAFRDLVQGHSHELQVHCYRILGSLQDAEDALQETLVSAWRNLGAFG-ERSSLRTWLYQIATNRCLSMLRAD 104
284990096   1 --MTTVLTDELDPRLLEHRRELTGYCYRMLGSAFDADDAVQETMVRAWRGLGDFE-GRSALRSWLYRIATNVCLDQLSGR 77 
29829905    1 -MSDGTATTDLDVRLEKHRVELTGYCYRMLGSSFEAEDAVQDTMVRAWRSYEKFE-GRSSLRSWLYRIATNVCLDMLTAG 78 
54022493   19 AAGAPGADADVLASFEAHRRELCAYAYRMLGSSFEAEDAVQETFTRAWKSYGSFE-GRASLRSWLYRIATNVCLDMLDGP 97 
251798539   1 ----MNETTFDEPLFASLKPGLTSFCYRMLGSIDDADDAVQETSIRVWQSWNTFR-QDSSFKTWVYRIASNLCLDKLRQS 75 
258655000  11 GRTAGPGRAELERRLEDHRRELGGYCYRMLGAAFETDDAVQDTMVRAWRALDKFD-GRSSLRTWLYRIATNVCLDLLSSR 89 
182436439  14 AGAGSADAAGIDSRLEGHRVELTGYCYRMLGSAFEAEDAVQDTLVRAWRNFDKFE-GRSSLRSWLYRIATNVCLDMLNAG 92 
229819018   4 SVPAVSTTAPTVADVDALRGRLTGYCYRMLGSAADTDDAVQETVIRAVGNLERFDpGRAALSTWVHAIATRVCLDMLRGA 83 
152967552  27 TSDTPMTTFELEPRLADHRAELRGYCYRMLGSAFDAEDAVQDTMVRAWKGIDGFE-GRSGLRSWLYRIATNVCLTMIESR 105
256396756   4 NVSTTTDRDTVADQLEPFRRELTAYCYRMLGSAFEAEDAVQETLLRAWSKFEGFQ-GRSQLRTWLYRIATNVCLDMAPAP 82 
256392370 105 SRRPRTAHPHpeaALPEPTGAGDAPP-----WLEPYPDVLLDHLvdrRPGPEARYETTEAISLAFITALQLLPPRQRAAL 179
284990096  78 QRRALPMDLSg--SPWQPVEASLAARrpataWVEPVLDRQVVAQ---DADPAEQAVQRESIRLAFVSALQHLPPRQRAVL 152
29829905   79 NKRARPMDLTd--STPLAQAALSPRPds--tWLEPMPDVRVLPT---ASDPAEAAVAKESVRLAFMAALQRLPPKQRAVL 151
54022493   98 QRRARPMDLSg--PSRPDSPLPAPQPdy--vWVEPIPNALAF-----GADPAEHAATKDSLRLAFVAACQHLPATQRAIL 168
251798539  76 KRRALPVDLFd--PAVAIVEPRDTLPds--aWIWPSPDF--------GGNPEDRLIRRDTLQLCFIALLQTLPPRQRMVL 143
258655000  90 NRRALPMDFG---PASPPVAESLGQPhpeatWIQPMPDGEVLt---gTADPADLAVQKDSVRLAFIAALQHLPPRQRAVL 163
182436439  93 NKRARPVDLTg--PTPLAQAALSPRPen--vWLEPMPDGRVLPS---VQDPAEAAVARESVRLAFVAALQHLPPKQRAVL 165
229819018  84 RRRALATDLG---PAASGGDIGAPLPae--aFVEPMPDSRLLe----AQDPGDAVVARETVRLAFVAALQRLPPRQRAVL 154
152967552 106 GKRARPMDLSa--SAWEPVEASLAHRrsedtWLEPMVDDRVLPQ---AGDPADIAVARESVRLAFVAALQHLPPRQRAVL 180
256396756  83 QRRARPMDLFs--PGSATAPNLAQLEen--vWVGPIPDERVL-----AGDPAEVAVGRESIRLAFIAALQKLAPRQRAVL 153
256392370 180 VLRDVLGYRAAEVAQMLDSTQESVSSALKRARATVDnhlNHlAESGGSSsgatitaspGARRPAAEHRLVARFTDAMERA 259
284990096 153 LLREVLRWRADEVAQLLDTTVASVNSALQRARATMAv--VG-GEAE------------TEPLDDVHRALLERYVDAFERY 217
29829905  152 ILREVLAWKASEVAELLDTSVASVNSALQRARATLAd-sEG-AAADAAV---------SDPLDEEQQKLLERYVAAFEGY 220
54022493  169 IMREVLRFSANETAEALTMSPASVNSALQRARATMSk--VR-PTATDD----------YDETDENQRKLVDEFVTAFEAY 235
251798539 144 ILKDVFEWSSKQIAETLAMSPAAVNNALQRARETMD---RA-QLRSDEL---------SSMDVQPEQQLLSRYVEAFEQF 210
258655000 164 ILREVLRWSAAEVADLLDSTVASVNSALQRARATLAa--VD-PAAGTH----------ADPMDEAQKGLLADYVKAFTSY 230
182436439 166 ILREVLAWKAAEVAELLGTSVASVNSALQRARATLT---ET-EGRAGDV---------SDPLDEQQLKLLERYVKAFEGY 232
229819018 155 VLRDVLAFSAREVADALGVSVAAANSALQRARATLE---AH-RPDPVDL---------AEPDDAGQRDLLRRYVAAFEAH 221
152967552 181 ILRDVLRWRAEEVATLLETTTASVNSALQRARATLAe-----RPDVDR----------AQPLDDSHRALLEEYVRAFEAY 245
256396756 154 ILREVLAWSAAETAELLDSSVASVNSALQRARATLAedgSA-SGET------------AKPLDDEQREFLAKYVKAFEAF 220
256392370 260 DLDALIDLLVTDVKLSMPPALIEFRGIETAHRIFVAtvFRPG-RSYRVVPT-HANGQPAFGLYLADGHAGVHRAHCFLVL 337
284990096 218 DVEGLVSLLHEDATQHMPPLEMWLRGRADIGTWMLG--PGAKcRGSRVLPT-IANGAPAFAQYRPRAGG-GHEPWALHVL 293
29829905  221 DMAALTALLHEDAVMTMPPFDLWLCGTPDITGFMTT--LGAAcAGSRLLPV-QVNGLPGFAQYKPDPEAGGFTPWALQVL 297
54022493  236 DMDALTALLKADVALSMPPIELWVRGPENVAAFMRG--HGSGcEGSRMVRLeGANGLPAFGHYKRTDTPGVYAPWSITVL 313
251798539 211 DIAALVALFHEEGCMSMPPFEMWIRGKDDLSAFYSL--TRWHcEGSRFVPItVNGGYPALAQYMPGKEGSGLVPWGIHVI 288
258655000 231 DIDALVLLLRQDATASMPPFALWLSGRDDIAAWHLG--PGAAcRQSKLIAL-EVNGSPAFAAYKLAADG-THRPFSIQVL 306
182436439 233 DMAALTALLHEDAVMTMPPFDLWLRGAGDITGFMTS--IGAAcAGSKLVPV-LANGSPGFAHYKPAEDGDGFVPWAVQVI 309
229819018 222 DVAGLTALLREDATTSMPPFAWWLRGGALIASLVAG---NDEcAHDRLLVT-RVNGGLGFGQYRPDDAG-RLRPFALVGV 296
152967552 246 DIDAFVQLLAAEVTQNMPPFELWLQGADDIAAWMLG--PGHLcRGSRLVPV-TVNGSAAYAHYKPVGAQGELVPFAIQAL 322
256396756 221 DIDGLTALLRADVSLNMPPFQLWLQGAEELRAWWNG--AGGGcRGSRLLPI-EANGMPAFAQYRVAEDGDGWTPWAIMVL 297
256392370 338 TTAGDQITAITSFTT---DVMARFGMPRTFPE 366
284990096 294 EVRDGRVAHISSFLDldnDLFRRLGLPVEPA- 324
29829905  298 EISDGRLTGFHFFLDt-kRWFPLFGLPLHLEA 328
54022493  314 EFDGPVISGLNFFLDt-eRLFPLFGLPMELRE 344
251798539 289 VTKENQILHVQNFIHt--PLFSRFGLPERIDQ 318
258655000 307 DLDGDKIARITYFLEt--SLFARFGLPASL-- 334
182436439 310 DVQDGAITGMHCFLDv-pRWFPLFELPDRLPA 340
229819018 297 EVVGGRIARTVTFLGa-aDRFGEFGLPLEWST 327
152967552 323 ELAGGRIVRITSFLDt--RLFDLFGIPRTPPA 352
256396756 298 EIRDGRLAGIGSYLDt-eRLFPLFDVPARLGA 328
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