Conserved Protein Domain Family
PRK08173

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PRK08173: PRK08173 
DNA topoisomerase III; Validated
Statistics
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PSSM-Id: 236172
Aligned: 58 rows
Threshold Bit Score: 1317.74
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
121610118   1 MTKTLVIAEKPSVAQDIVRALtpvaGK--FDKHEDHFENERYVVTSAVGHLVEIQAPEQFEVKRGKWSFAHLPVIPPYFD 78  
261416374  31 EGKTLIIAEKPSVAADLVKVL----GAksFKKETAYYESDTTIVSHAIGHLVGIADPKDIDERYKAWDMKTLPMLPEKFP 106 
30249913    1 MSKKLIIAEKPSVASDIARAL----GG--FVKQKDYFESDEFVVSSAIGHLLELIVPEEYEVKRGKWSFDHLPVIPPRFD 74  
114330417   1 MSKKLIIAEKPSVANDIARVL----GG--FTKQGDYFESDEYVLSSAIGHLLELIVPEEYEVKRGKWSFDHLPVIPPRFD 74  
82701530    1 MGKTLIIAEKPSVAADIARAL----GG--FTKHTDYFENDEYVVSSAVGHLLELAVPPEHEVKRGKWSFTNLPVIPPHFD 74  
119896387   1 MSKQLIIAEKPSVAQDIARAL----GG--FTKEKDYFESDDYVLSSAVGHLLELAVPEEFEVKRGKWTFAHLPVIPPHFA 74  
217968561   1 MSKQLIIAEKPSVAQDIARAL----GG--FTKEKDYFESDEYVLSSAVGHLLELTLPEEFEVKRGKWTFAHLPVIPPHFA 74  
161377478   1 MSKKLIIAEKPSVAADIARAL----GG--FTKHDDYFESEELVLSSAVGHLLELACPEEFEVKRGKWSFAHLPVIPPHFA 74  
257091700   1 MSKKLIITEKPSVAADVARAL----GG--FVRHDDYYEGDEYVLSSAIGHLLELACPEEYEVKRGKWSFAHLPVIPPHFA 74  
56477104    1 MSKQLIIAEKPSVAQDIARAL----GG--FTKEKDYFESDEYVLSSAVGHLLELAVPEEYEVKRGKWTFAHLPVIPPRFA 74  
121610118  79 LKPVDKTKGRLNAVVKQARRRDVGALINACDAGREGELIFRLIEQYAggdkPLGKPVERLWLQSMTPQAIRDGFAALRPE 158 
261416374 107 LVALPTTKAHLSALGKLIKRKDVTTIINACDAGREGELIFYYIVDYIlkgnFKGKTFKRLWMQSMTPAAIKDAFEHLRTE 186 
30249913   75 LAPIEKTTDRLKLLSKLIKRKDVDMLINACDAGREGELIFRYIVRHV----GSKKPIKRLWLQSMTPSAIREAFANLLND 150 
114330417  75 LAPIEKTMDRLKLLSKLIKRKDVDVLINACDAGREGELIFRYIVRHT----GSKKPIKRLWLQSMTPVAIREAFTNLLED 150 
82701530   75 LNPIEKTESRLKLLTRLIKRKDVDALINACDAGREGELIFRYITRHV----GTKKPVKRLWLQSMTPASIREGFNKLLDD 150 
119896387  75 LKPIEKTDDRLKLLTRLIKRKDVTGLINACDAGREGELIFNFIAQHA----GTNKPMQRLWLQSMTPAAIRDGFAHLRAA 150 
217968561  75 VKPIEKTEDRLKLLTRLIKRKDVTGLINACDAGREGELIFNFIAQHA----GTKKPMQRLWLQSMTAQAIRDGFAHLRAA 150 
161377478  75 LKPIEKTESRLKVLNKLIKRKDVTGLINACDAGREGELIFNYIAQNA----KSGKPVQRLWLQSMTQGAIRDGFSRLRPG 150 
257091700  75 LQPIAKTESRLKLLVRLIKRKDVAGLINACDAGREGELIFNYINQHA----GNAKPVERLWLQSMTPQAIREGFSRLRSG 150 
56477104   75 LKPIEKTDDRLKLLTRLIKRKDVTGLINACDAGREGELIFSFIVQHA----KTDKPISRLWLQSMTAGAIRDGFAQLRSA 150 
121610118 159 QQMQGLASAARSRSEADWLVGINGTRAMTAFNSRDGGFFLTTVGRVQTPTLSLVVEREEKIRQFVSRDYWEVHALFGAAA 238 
261416374 187 EDMVNLRNAALCRSEADWLVGMNGSRGLTAYNSSMGGFQITPCGRVQTPTLAIIVKREEERNRFIPQKFWTIEASFDNAG 266 
30249913  151 AEVQSLADAAVSRSEADWLVGINGTRVMTAFNSQEGGFHKTTVGRVQTPTLAILVEREEAIKKFVVRDYWEVHATFQAES 230 
114330417 151 SEVQPLADAAVSRSEADWLVGINGTRVMTAFNSQEGGFHKTTVGRVQTPTLAILVEREEAIKKFVARDYWEIHAVFQAEN 230 
82701530  151 EDVWPLAEAAVSRSEADWLVGINGTRAMTAFNSQEGGFHKTTVGRVQTPTLAILIEREDIIKKFVPRSYWEVHATFSARE 230 
119896387 151 RDVEGLRNAAICRAESDWLIGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLAIVVEREDKIRKFKPRDYWELEATFGCAA 230 
217968561 151 QDVEGLRNAAICRAESDWLIGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLAMVVEREDRIRKFKSRDYWELEARFGCAA 230 
161377478 151 QEMEGLGDAAVCRSESDWLVGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLAIVVERERKIRDFKSRDYWEVEADFTAKA 230 
257091700 151 TEMQGLGDAAVCRSESDWLVGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLALMVDREDRIRKFVARAYWELDGVFACAA 230 
56477104  151 QEVEGLRSAAVCRAESDWLIGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLAIVVEREEKIRRFKPRDYWELEATFGCKA 230 
121610118 239 GPYPGKWFNPQWKKSD-DAEARAERLWSVAEAQAIAQAVRDQPASVSEESKPSTQAAPPLFDLTSLQREANGKFGFSAKT 317 
261416374 267 AGYQGKW----FTVDKeNGKDRVKQIFDEARAQEILAKCKGKTGSIEETTAPSQQKCGQLYDLTTLQREANNRFGFSAKT 342 
30249913  231 GVYKGKWFDEGFSKRKdESESRADRIWDHAKAEVIRDKCAGRTGVVTEESKPSRENCPLLYDLTSLQRDANSRFGFSAKV 310 
114330417 231 GSYKAKWFDESFSKRKdESESRADRIWDHARAEAIRDKCDGRTGIVSEESKPTRENCPLLYDLTSLQREANSRFGFSAKT 310 
82701530  231 GSYKGRWFDESFTKARkDNEQKAERLWDHATAEAIRVKCLGKSGVVTEESKPATETCPLLYDLTSLQRDANGRFGFSAKT 310 
119896387 231 GEYTGRWLDENFRKPEgDEHANAHRLWDKARAEAIRAKCEGKPGVVTEEAKPSTQLSPLLFDLTSLQREANGRFGFSARV 310 
217968561 231 GEYPGRWFDEKFKRPEgDEHATAFRLWDKAQAEAIRAKCAGKPGVVSEEAKPSTQLSPLLFDLTSLQREANGRFGFSARV 310 
161377478 231 GSYKGKWFDEAFKGKNdDEHARADRLWEVARAEAIRAATEGKPGEVTEEAKPETRLSPALFDLTTLQREANARFGFSAKT 310 
257091700 231 GDYRGRWFDENFKGKDdDEHARADRLWDESRALALQNKCADQDGDVSEESKASTQLSPLLFDLTSLQREANGRFGFSAKA 310 
56477104  231 GRYVGRWFDESFRKPEgDEHATAFRLWDRARADAIKAKCDGKPGIASEESKPSTQLSPLLFDLTSLQRDANGRFGFSARV 310 
121610118 318 TLALAQSLYERHKALTYPRTDSRALPEDYLPVARQTFEMLAGsamRH------------LAPHALTALNNGYVRMSRRIF 385 
261416374 343 TLSIAQSLYEHYKATTYPRTDSRCLPEDYVAPVKATLGKIEG----P------------LAKFAQEALDKNYVKRTPKVF 406 
30249913  311 TLGLAQALYEKHKVLTYPRTDSRALPEDYPAIVKDTLQVLKG---SR------------YDRFASQILESDWVKPNKRIF 375 
114330417 311 TLGLAQALYEKHKVLTYPRTDSRALPEDYSETVKDTLQALKE---SH------------YDQFASQILKSDWVKPNKRIF 375 
82701530  311 TLSLAQALYEKHKVLTYPRTDSRALPEDYIATVKETLGSLQN---SG------------YGAFAAQILGAGWVKPNKRIF 375 
119896387 311 TLQLAQALYEKHKVLTYPRTDARALPEDYLGTVKDVMAGLPDt----------------YAPFANEIAKQGWVRPNKRIF 374 
217968561 311 TLQLAQALYEKHKVLTYPRTDARALPEDYLATVGEVMRTLPDq----------------YAPFANEITRQGWVRPNKRIF 374 
161377478 311 TLSLAQALYEKHKVLTYPRTDSRCLPEDYLPTVKETLTILTG---EGagkghdevllarYSPFAHQILARNWVLPNKRIF 387 
257091700 311 TLGLAQALYEKHKILTYPRTDSRALPEDYRQTVLSTLSMLTG---EGvgkghdeqtlarYAPFAGRILASNWVVPNKRIF 387 
56477104  311 TLQIAQALYEKHKALTYPRTDARALPEDYVGTVKDVLHALPDd----------------YAPFAGEIMKQGWVRPNKRIF 374 
121610118 386 DSSKVSDHFAIIPTLQAPGGLNDAEQRLYDLVVRRFIAVFFPNAEYTVTTRISTVsvapnggaaAVHRFKTEGKVLVKTG 465 
261416374 407 DNSKISDHFAIIPTGVVPKGLSEAEEKIYTMICQRFIAVFFPPAQYLNTTRITTV---------ENETFITEGKILVDPG 477 
30249913  376 NNAKVSDHFAIIPTALVPKKLNEAEEKLYDLVTKRFLAIFYPAAEFLITTRITRV---------ENEPFKTEGKVLVHAG 446 
114330417 376 NNAKVSDHFAIIPTALVPKKLNEAEEKLYDLVTKRFLAIFYPAAEFLVTTRITRV---------EDEPFKTEGKVLVHAG 446 
82701530  376 NNAKISDHFAIIPTTIEARGLNEVESKLYDLVVKRFLAIFYPAAEFLVTTRITRV---------ENEPFKTEGKVLINPG 446 
119896387 375 NNAKISDHFAIIPTGTLPKSLSEAEHKIYDLVTRRFLSVFYPAAEYQITTRITRV---------EGEAFKTEGKVLVNAG 445 
217968561 375 NNAKISDHFAIIPTGALPKSLSDAEHKIYDLVTKRFLAVFYPAAEYQITTRITRV---------EGEAFKTEGKVLVNPG 445 
161377478 388 NNAKISDHFAIIPTPQAPKSLNEMEQKLYDFVVRRFLSVFFPAAEYMVTTRITRV---------EGHPFKTEGKVLVNPG 458 
257091700 388 NNAKVSDHFAIIPTLQAPKHLSEPEMKLYDMVVKRFLAVFHPAAEYLITTRITRV---------AGEPFKTEGKVLVNPG 458 
56477104  375 NNAKISDHFAIIPTGTVPKSLSEAEQKIYDLVTRRFLAVFYPAAEYRITTRITRV---------ENEAFKTEGKVLVNPG 445 
121610118 466 WLAVYGKEAadEve----gGkegdKGQNLVPVQPGERVLTLQADPRGFKTKPPARYSEATLLGAMESAGKQLDDDELREA 541 
261416374 478 FKAIYGKES---------------DEESNIPKLNGNTAKTLAIESKEDFTKPPAHYTESTLLSMMESAGKLVEDDELRDA 542 
30249913  447 WQTVYGKVE--S-------AqgqeEESVLVAVTPGETVLAQEVAVVAGKTRPPARYNESTLLSAMEGAGKLVEDEELRAA 517 
114330417 447 WQTVYGKVE--S-------VrgqeEESVLVAVTPGETVLAQEVTAVANQTHPPARYNESTLLSAMEGAGKLVEDEELRAA 517 
82701530  447 WQAVYGKEA--Q-------PsgteDNSTLVKLEPDEPVTAEEIEVASHQTRPPPRFNEATLLSAMEGAGKWVEDEELREA 517 
119896387 446 WLAVYGKEA--AnedgegkDagkdSGRQLVAVKPGETVSTDDILVKALQTKPPARFNEATLLSAMEGAGKMVDDEELRAA 523 
217968561 446 WLTVYGKEA--Andekd---akdggAPQLVAVKQGETVSTEDIVVKSLQTKPPARFNEATLLSAMEGAGKMVDDEELRAA 520 
161377478 459 WLAVYGKEGqdG------------DEGNLVAVDAKEKVKTDEVTVKANATKPPPRYSEATLLSAMEGAGKMVDDEELKAA 526 
257091700 459 WLAVYGREGqeG------------EEGNLVAVQAGERVHASEMLLSAHQTRPPARYSEASLLTAMEGAGKAMDDEELRAA 526 
56477104  446 WLAVYGKEA--A-------KaddeGGAQLVAVEQNERVATEDILVKALVTKPPARYNEATLLSAMEGAGKMVDDEELRAA 516 
121610118 542 MQAKGLGTPATRAAIIEGLLTEKYMLREGREIIPTAKAFQLMLLLRGLQVEELCRADLTGEWEFKLAQMEKGQLSRAAFM 621 
261416374 543 MKERGLGTPATRAAIIEKLVSDKYVVRDGKEMIPTAKAFDLIKVLSAMNCEALTSPELTGEWEYKMDLISKGKESREAFM 622 
30249913  518 MSAKGLGTPATRAAIIEGLIHENYVERSGRELQPTAKAFSLVTLLRGLKIPELISPELTGDWEFKLRQIEQGQLKRDVFM 597 
114330417 518 MSTKGLGTPATRAAIIEGLIHENYVERSGRELQPTAKAFSLVTLLRGIKVSELISPELTGDWEFKLRQIEQGQLKRDVFM 597 
82701530  518 MSAKGLGTPATRAAIIEGLVSENYIQRVGRELHPTAKAFSLITLLRGLKVPELTSPELTGDWEYKLRQIEQGKLERNKFM 597 
119896387 524 MAERGLGTPATRAQIIEGLIAEQYIHREGRELIPSAKAFSLITLLTGLGVNALTSPELTGGWEYKLSRMERGELSREAFM 603 
217968561 521 MAERGLGTPATRAQIIEGLISEQYIHRDGRELIPSAKAFSLITLLKGLGVTALTSPELTGGWEYKLAQMEHGKLSREAFM 600 
161377478 527 MAGRGLGTPATRAQIIENLIGEQYMHREGRELIPTAKAFTLMTLLNGLGIKELTQPELTGDWEWKLGRIEKGEFTRDEFM 606 
257091700 527 MAGRGLGTPATRAQIIENLLAEQYLQREGRELQPTAKAFSLMTLLNGLGIPELTAPELTGEWEWKLARMERGELARTAFM 606 
56477104  517 MGERGLGTPATRAQIIEGLIAEQYLHREGRELIPSAKAFSLITLLKGLDVSSLTSPELTGEWEHKLAQMERGQLSRPEFM 596 
121610118 622 ADIAAMTERMVTKAREYDRDTIPGDYATLQAPCPNCAGVVKENYRRYACAGkdgaspCGFSFGKSPAGRTFETAEAETLL 701 
261416374 623 NGIIEMTKTMVKNIKGFKEESTTGE----ASFSPVNGKKVFETVSRYTTED-------GIVIRKITGGKHLSESEIVELL 691 
30249913  598 EKIAAMTRHIVEQAKNHRDKTISGDFATLQVPCPGCGGVIKETYKKFQCQQ------CDFALWKILAGRQFEAAEMETLI 671 
114330417 598 EKIATMTRHIVEQAKNHRGKTISGDFATLQVPCPKCSGVIKETYKKFQCQQ------CDFALWKILAGRQFEVNEMETLI 671 
82701530  598 AEIAEMTSHIVQQAKSHRGETISGDFSTLKSPCPKCGGVIQETYKKFQCQK------CDFALWKILAGRQFETAEMEQLI 671 
119896387 604 HEIAEMAREVVERAKRYESDTVPGDFVTLKTPCPKCGGTVKENYKKFACQA------CDWSTWKIVAGRQFEIDEIETLL 677 
217968561 601 NEIAEMTREVVERAKRYESDTVPGEFVTLQTPCPKCGGVVKENYKKFACQA------CDWSTWKIVAGRQFEYDEIETLL 674 
161377478 607 REIAEMTRHMVERAKQYEADTIPGDFGVLTAPCPKCGGQIRETYKKFQCGS------CDYALWKIVAGRQYEPAEIEQLL 680 
257091700 607 KEIAAMTQRIVDRAKSYDSDTIPGDFGELSTPCPKCGALIKETYKKFQCQA------CDFSLWKIVAGRQFEASEIEELL 680 
56477104  597 REIAEMAREMVERAKRYESDTVPGDFATLSAPCPKCGGVVRENYKKFACQA------CDWSAWKIVAGRQFEIHEIETLL 670 
121610118 702 RERKIGPLEGFRSKAGWPFSSEIVIRydeqtHNYKLEFDFGDDRkNAEEsGALVEFK-DAALGPCPLCGAGVHEHGNNYL 780 
261416374 692 TKRKIGPLTGFRSKKGAEFSAGLIIN-----DQNKVEFVFE---------EKPEEIElGEVIGKSPVDGSDVYETLTGYV 757 
30249913  672 STREIGPLSGFRSKMGRAFNAIVRLT-----DDYEMKFDFGNEA--DQA-QEKVDFSaQQPLGKCPQCGHSVYEHKLLYV 743 
114330417 672 STREVGPLSGFRSKMGRAFNALVRLT-----DDHEMKFDFGNEA--TQT-EEEVDFSaQQVLGKCPQCGHSVYEHKLFYV 743 
82701530  672 TRREVGPLQGFRSKMGRLFNANIKLT-----DELEMKFDFGADG--EQD-TEEVDFSgQEPLGKCPRCSGRVFDHGMSYL 743 
119896387 678 RDGKVGPLLGFRNKMGRLFNAEIKLN-----DDKQPEFDFGQPKeGEEG-GEAVDFSgQQSIGACPKCGANVFEHGLAYV 751 
217968561 675 RAGKVGPLLGFRNKMGRLFNADIVLN-----EDKQPTFDFGQPK-EGEE-AEEVDFSdQQPVGACPKCASRVFEHGMAYV 747 
161377478 681 TEKQVGPLTGFRNKMGRSFSAAIKLN-----DELQPEFDFGQDKaDAAD-AEPVDFSaQESLGKCPKCAANVFEHGTSYV 754 
257091700 681 TRRRIGPLSGFRNKMGRPFNAIIQLN-----ADNSPEFDFGQGSaGADGpAEEVDFSqSETLGPCPKCGASVFEHGMAYV 755 
56477104  671 RERRVGPLTGFRSKMGRLFNAEIRLN-----DEQQPEFDFGQPKdDGEG-AEPVDFSaQEPLGPCPKCGARVFEHGMAYV 744 
121610118 781 CSKSVPtaaqPAPSCSFKSGRVILQQPVEREQMQKLLATGKTDLLDKFVSMRTRRAFKAHLVwDPAAGKVNFEFAPSKFP 860 
261416374 758 SESYV-----KKEPSGLSLPKILLGKEIPLDDIKKLLAGEKTSLIKGFRSNKTRRLFDAYLT--LVKGKLKFDFPPREFK 830 
30249913  744 CEKSVG----AGAPCSFRTGKIILNRAIEAEQVVKLLQTGRTDLLAGFVS-RKGRPFSAYLV-VGPAGKIGFEFEQKKTK 817 
114330417 744 CEKAVG----PSPSCSFRTGKIILNRAIDTEQVIKLLQTGRTDLLTGFIS-KKGRPFSAYLV-VGPEGKIGFEFEQKKVK 817 
82701530  744 CEKSLG----SAHTCSFKIGKIILSRPLEREQVMKLLQTGKTDLLTKFIS-KKGRPFSAYLV-AGKDGKIGFEFEVKEAK 817 
119896387 752 CEKSVG----PGKNCDFRSGKIILQQPIEREQMAKLLTDGKTDLLKGFVSARTRRKFSAFLV-RGKDGKVGFEFEAKTPK 826 
217968561 748 CEKSVG----PGKSCDFRSGKVILQQPIEREQMARLLTEGKTELLKGFVSARTRRKFSAFLV-RGKDGKVGFEFEAKAPK 822 
161377478 755 CEKSVG----PAKTCDFRSGKIILQQPIDAAQMKKLLADGKTDLLKEFVSNRTRRKFSAYLV--NQGGKVGFEFEKKVAK 828 
257091700 756 CERSQG----SAKTCDFRSGKVILQQTVEAEQMQKLLSSGRTDLLRNFVSARTRRKFSAYLV-RGADGKVGFEFEKREPR 830 
56477104  745 CEKSVG----PEKSCDFRSGKVILQQPVEREQMVKLLADGRTDLLKGFVSTRTRRKFSAFLV-RGGDGKVGFEFEAKTPK 819 
121610118 861 PrqpvaAAAKTSAHVGHAGHAGragsalkADRAVAAKKAPVKRVAAKVKAAAAKP 915 
261416374 831 P-----------------------------------------RRFAKKAAPKGE- 843 
30249913  818 S-----KPADTVPETGKAAS----------------------------------- 832 
114330417 818 S-----KRADAVPETGKAAS----------------------------------- 832 
82701530  818 Vk--------------------------tPAETEETKVAKPRAAPMKKTLSAKTR 846 
119896387 827 A------GAKSTPAKAAANEET-------------------GKPAPRKRAGGKTA 856 
217968561 823 A------GAKPAAGKGDEAAGE------------DAEPAAPRKRAARKAS----- 854 
161377478 829 P-----------------------------------------KAPAKKKTEA--- 839 
257091700 831 T-----PAKKSRATPTSEPSDA-------------ATPTSGTTTRSRKKASSS-- 865 
56477104  820 A-----GAKGKTAAAADDEKPP---------VAATATAKPARAPARKRSSAA--- 857 
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