Conserved Protein Domain Family
PRK07670

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PRK07670: PRK07670 
FliA/WhiG family RNA polymerase sigma factor
Statistics
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PSSM-Id: 181075
Aligned: 19 rows
Threshold Bit Score: 399.034
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
288553039   2 ARVSTNENQKIWDKWLTSRDLDACDELIRLYMPIVNYHVQRISVGLPKNVSKDDLTSHGMLGLYDALEKFNPNRDLKFDT 81 
169827149  17 TQPILNDEQKLWNRWIHERDPDAGDLLIKKYISLVSYHVQRISAGLPKSVSRDDLTSLGMIGLFDALNKFDINRDLKFDT 96 
56419781    2 GSALKGEERKYWDEWIHGRDRHAAEELVQRYMPLVFYHVQRLSATLPSSVPKDELVSLGLVGLYDALEKFDPSRDLKFDT 81 
212639538   1 ---------MCWQKWIDTRDREAGDQLIEKYMPLVDYHVQRIASSLPKSVKKEDLKSLALLGLYDALEKFDPSRDLKFDT 71 
138894766   4 ALTLKGDEQKYWDDWVNGRDRHAAEELVQRYMPLVSYHVQRLSATLPSSVPKEELVSLGLVGLYDALEKFDPSRDLKFDT 83 
56964009    1 ----MANAAELWKQWDDEHSEVAAEALIEHYMPLVAYHVQRISNGLPSSISKDELKSHALSGLLDAIAKFDSKRALKFDT 76 
239826640   2 ANVLTSEERKYWDRWIYHRDPQAGDKLVQTYMPLVHYHVQRIAASLPKTISKQELISLGLMGLYDALEKFDPSRDLKFDT 81 
261419446   2 GSALKGEERKYWDEWIHGRDRHAAEELVQRYMPLVFYHVQRLSATLPSSVPKDELVSLGLVGLYDALEKFDPSRDLKFDT 81 
297530579   2 GSALKGEERKYWDEWIHGRDRHAAEELVQRYMPLVFYHVQRLSATLPSSVPKDELVSLGLVGLYDALEKFDPSRDLKFDT 81 
23099037    2 NMTNSPLEQKLWDKWKNHQDGEAANQLINNYMYLVNYHTERIASHLPNNVVKDDIRSFGILGLYDALKKFDPSRDLKFDT 81 
288553039  82 YASFRVRGAIIDGLRKEDWLPRSMREKIKRVEACIQQLEQEFGRNVSAKEVGVKLDMPEEEVYQIMNEHYLSNLLSIDER 161
169827149  97 YASFRVRGAIIDGLRKEDWLPRSAREKAKKLDAQIEQLEQKYMRHVTPEELAKHMEVPVEDVYQTVQEHFFSNVLSINEQ 176
56419781   82 YASFRIRGAILDGLRKEDWLPRSMRDKAKKIEEAIERLEQRHMRSVTAKEIAAELGMTEEEVQAAASETFFSHWLPLGQT 161
212639538  72 YASFRIRGAILDGLRKEDWLPRSVREKAKKIEATIERLQQMHMRDVSAKEVADALNISEDEVYAVMNEQFFANVLSLDER 151
138894766  84 YASFRIRGAILDGLRKEDWLPRSVRDKVKKIEETAERLEQRYMRSVTAKEVAAELGMTEEEVQAAVNETFFSNWLSLGQT 163
56964009   77 YASFRIRGAIIDGLRKEDRLPRTIRDKVKKLEQITEQLEQEKGRSVLPGEVAAAMGLPEKEIEALKREQFASHTLSLDDV 156
239826640  82 YASFRIRGAIFDGLRKEDWLPRSVREKAKKIEETIEKLEQRYMRSVTAKEVADELGITEEEVYMAVNENFFANVLSFQHV 161
261419446  82 YASFRIRGAILDGLRKEDWLPRSMRDKAKKIEGAIERLEQRHMRSVTAKEIAAELGMTEEEVQAAASETFFSHWLPLGQT 161
297530579  82 YASFRIRGAILDGLRKEDWLPRSMRDKAKKIEEAIERLEQRHMRSVTAKEIAAELGMTEEEVQAAASETFFSHWLPLGQT 161
23099037   82 YASFRIKGSIMDGLRKEDWLPRSIREKTKKVEQAMEEYEQSYQREANSSEIANLTGMTTEEVETTMKDALFSNILSIEEK 161
288553039 162 TNDSDRSDsnnsaSYSATLIDKQTKTPEESLMFEAVKEELIKGINRLSENEKLVISLFYFDELTLTEIGHILNLSTSRIS 241
169827149 177 -QDQEEVD-----GKSFVIRDDTTKTPEQSVVKSELLDDLAENIQKLNEKEQLVLSLFYTEELTLTEIGEMLELSTSRIS 250
56419781  162 TVDEDEGL--------LAVRDDRAPLPEEQIVKQEMIEKLAEAIGQLNEKEQLVISLFYKEELTFTEIGSLLHLSTSRIS 233
212639538 152 PFDDDDDQ------PSFTIRDDHSPSPEEHMLREEQIAQLAQVIQQLNEKEQLVISLFYKEELTFTEIGHIMGLSTSRIS 225
138894766 164 ACEEDDEP--------LAIRDDRAVLPEEQVVKQEMIEKLAVGIGQLNEKEQLVISLFYKEELTFTEIGSILQLSTSRIS 235
56964009  157 MHMNDHLDp---sAVAYQFEDEQAIMPDDKLVEEDTRKELAEMIKELGRNEQLVIQLSYYEELSLTEIGRILNLSTSRIS 233
239826640 162 ITENKEEE-----NALLAIRDEKTPSPEEEVLKQELYEKLAEVIQQLSEKEQLVISLFYKEELTFTEIGEILGLSTSRIS 236
261419446 162 TVDEDEGL--------LSVRDDRAPLPEEQIVKQEMIEKLAEAIGQLNEKEQLVISLFYKEELTFTEIGSLLHLSTSRIS 233
297530579 162 TVDEDEGL--------LSVRDDRAPLPEEQIVKQEMIEKLAEAIGQLNEKEQLVISLFYKEELTFTEIGSLLHLSTSRIS 233
23099037  162 PKGNSDQLk---eGIGYSISDERAILPENHIVNEELKEELIQGIKLLNEKEQLVVSLFYNEELTFTEIGQVVGLTTSRIS 238
288553039 242 QIHSKALFRMNQLINK 257
169827149 251 QIHSKALLKLRKLLSS 266
56419781  234 QIHAKALWKLRRFFEK 249
212639538 226 QIHAKALFKMRKLIEQ 241
138894766 236 QIHAKALWKLRRFFAE 251
56964009  234 QIHARAIAKLRKGLQK 249
239826640 237 QLHSKAIFKLRKILEQ 252
261419446 234 QIHAKALWKLRRFFEK 249
297530579 234 QIHAKALWKLRRFFEK 249
23099037  239 QIHKRSIFKLKKTLEK 254
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