Conserved Protein Domain Family
PRK07406

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PRK07406: PRK07406 
RNA polymerase sigma factor RpoD; Validated
Statistics
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PSSM-Id: 236012
Aligned: 31 rows
Threshold Bit Score: 584.824
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
284928680   1 MTQANDLLTLTEPQMEVTFFIDEDINEtssdsinsittepDGKNRKISASRRRDTS--KKKPYTEDSIRVYLQEIGRIRL 78 
166368188  17 LDLIDLDEDFDDEDIELELEEVSDSND-------------GKKTRRLASARRRDAA--RKKPYTEDSIRIYLQEIGRIRL 81 
81299460   37 SSRKKATTAVVEPATTIAPTADVDAIDdedsv-----------gededAAAKAKAK--VRKTYTEDSIRLYLQEIGRIRL 103
56750888   37 SSRKKATTAVVEPATTIAPTADVDAIDdedsv-----------gededAAAKAKAK--VPKTYTEDSIRLYLQEIGRIRL 103
16332132    6 EPLTKAESAELEQEIELSQYINTDDIDdddidvedleqevAATEGKEKKVRKIRKDavKKKPYTEDSIRIYLQEIGRIRL 85 
298491609  21 PPEIEEELLLIEDEEDLLLTDDGEIDDflepq----sdeddAKSGKAAKSRRRTQS--KKKHYTEDSIRLYLQEIGRIRL 94 
75907632   21 QPEIELDDLLIEEDEDLLLADDGDIDEflepq----tdeddAKSGKAAKSRRRTQS--KKKHYTEDSIRLYLQEIGRIRL 94 
17232755   21 QPEIELDDLLIEEDEDLLLADDGDIDEflepq----tdeddAKSGKAAKSRRRTQS--KKKHYTEDSIRLYLQEIGRIRL 94 
186686393  21 QPELELEELLIDDEEDLLIIDEGDDEFlepqs-----deddaKSGKAAKSRRRTQS--KKKHYTEDSIRLYLQEIGRIRL 93 
113478384  27 TRQVNDELEILIGDREEYIDAQSDEDD--------------LKSGKVAKSRTRTAG--KKKHYTEDSIRLYLQEIGRIRL 90 
284928680  79 LRAEEEIELARKIADLLQLERIREALWeeldqVPNDEQWAKRIfqwenieqiirtqsskekepkwsevtsllqekktisn 158
166368188  82 LRAEEEIELARKIADLLKLERIREDFC-----LYSDAEWGKQVflferiekiiaeksekepklsd--ikaylgktelmap 154
81299460  104 LRADEEIELARQIADLLALERIRDELLeqldrLPSDAEWAAAV------------------------------------- 146
56750888  104 LRADEEIELARQIADLLALERIRDELLeqldrLPSDAEWAAAV------------------------------------- 146
16332132   86 LRAEEEIELARQIADLLELELIRDNLTlqlerQPSELEWGKQVwkletakqrlvgdkkkepkkkd--idsylanpdnels 163
298491609  95 LRADEEIELARKIADLLELERVRDRLYeqlerEPQFKEWAEAV------------------------------------- 137
75907632   95 LRADEEIELARKIADLLELERVRERLSeklerDPRDSEWAEAV------------------------------------- 137
17232755   95 LRADEEIELARKIADLLELERVRERLSeklerDPRDSEWAEAV------------------------------------- 137
186686393  94 LRADEEIELARKIADLLELERVRERLSeqldrDPRDSEWAEAV------------------------------------- 136
113478384  91 LRADEEIELARKIADLLELERIREELIyhldrEPQVSEWANAV------------------------------------- 133
284928680 159 lekiweleqKSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 238
166368188 155 lveewlaksKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 234
81299460  147 ---------DSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 217
56750888  147 ---------DSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 217
16332132  164 lenewsqqpNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 243
298491609 138 ---------QLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 208
75907632  138 ---------QLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 208
17232755  138 ---------QLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 208
186686393 137 ---------QLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 207
113478384 134 ---------DMELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 204
284928680 239 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 318
166368188 235 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLET 314
81299460  218 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 297
56750888  218 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 297
16332132  244 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 323
298491609 209 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 288
75907632  209 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 288
17232755  209 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 288
186686393 208 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 287
113478384 205 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLET 284
284928680 319 PIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 398
166368188 315 PIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 394
81299460  298 PIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQI 377
56750888  298 PIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQI 377
16332132  324 PIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 403
298491609 289 PIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 368
75907632  289 PIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 368
17232755  289 PIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 368
186686393 288 PIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 367
113478384 285 PIGKEEDSRLGDFIESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQI 364
284928680 399 EAKALRKLRHPNRNSVLKEYIR 420
166368188 395 EAKALRKLRHPNRNSILKEYIR 416
81299460  378 EAKALRKLRHPNRNSILKEYIR 399
56750888  378 EAKALRKLRHPNRNSILKEYIR 399
16332132  404 EAKALRKLRHPNRNSILKEYIR 425
298491609 369 EAKALRKLRHPNRNSVLKEYIR 390
75907632  369 EAKALRKLRHPNRNSVLKEYIR 390
17232755  369 EAKALRKLRHPNRNSVLKEYIR 390
186686393 368 EAKALRKLRHPNRNSVLKEYIR 389
113478384 365 EAKALRKLRHPNRNSILKEYIR 386
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