Conserved Protein Domain Family
PRK06811

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PRK06811: PRK06811 
RNA polymerase factor sigma-70; Validated
Statistics
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PSSM-Id: 180707
Aligned: 65 rows
Threshold Bit Score: 192.462
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
28211460    1 MHIDRNNFLDEIRKGNTKALDYIMETYSPLVKGIVTKVLYTLGNNGLVEECIADVFISVWKNNVSFTGDGLSFKKWIACI 80 
42784367    1 --MREVEIVEGLRKKDMKALHAAIDQYGDLIYKVVHGVLDTSHSKVLVDECVDDILLIIWYNIDSYDEKRGKFRNWLISI 78 
52143741    2 IFNSEEDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPMEKQYVDDCYNDVFTVIWFHIDQFDIDKGNLKSWMIGI 81 
222095341   2 IFDSEVDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVIWFHIDHFDTEKGNLKSWMIGI 81 
218234226   2 IFNSEEDLIIAMKKHDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVIWFNIDQFDTEKGNLKSWMIGI 81 
218234415   1 --MKDIEIVEGLRKQDMLALHTAIDRYGDLIYKVVHSILDTAQSKVLVDECVDDILLIVWYNISSYDENRGKFRNWLISV 78 
217959200   2 IFNSEVDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVIWFHIDHFDTEKGNLKSWMIGI 81 
15895043    1 MNKVDEEIVEGILKRDLNSFNKFIECYGIMIHNVVTSILNKSHESQSIEECVDDILMCIWRNMDCFSKERGSLKCWIIVI 80 
187932352   1 MTIDEDNFLSELKKRNTKALEYIINTYSNLVFKVVINVLGYDNYES-AKECLNDIYLLVWNKHQLYNQQKASFKNWLLAV 79 
49477300    2 IFNSEEDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPMEKQYVDDCYNDVFTVIWFHIDQFDIDKGNLKSWMIGI 81 
28211460   81 SKYKAIDYYRKNKNNLEMYDiDECIEKSSYDLEEEIIDLENEDKLLKLINKLEETNRSIFIMKFFLGMSSSEIGKKLNLS 160
42784367   79 AKFKAIDFKRKSNQVYRLQEfQQ--DIYEERTGTNQTKEEEEENFYLLIRSLNNEDKKIFIKRYLDEYSVQEIASELGLA 156
52143741   82 TKLKALEYKKKVYKENKIDK-----DVEINTGVHDRYEIEQEEEIMGIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVT 156
222095341  82 TKLKALEYKKKVYKENKIDK-----DVEIDTGVHDRYDIEQEEEIMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVT 156
218234226  82 TKLKALEYKKKVHKENTIDK-----DVEIDTGVHDRYEIEQEEEIMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVT 156
218234415  79 ARFKAIDYKRKSNKSYQLQEfQQ--EIYEDRKNVNLTKEERDYNFYVLIKELNEEDKKIFIKRYLDEYSVQEIALEFGMT 156
217959200  82 TKLKALEYKKKVCKENKIDK-----NVEIDTGIHDRYEIEKEEEIMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVT 156
15895043   81 SKNKALDYKKKLKKIMNSVDiDNVKLNSLVDIEQDYLKEENRKSIIELLNNLSIKDKEIFIKRYMNDWSIEKISKDMGLT 160
187932352  80 AKYKAIDYKRSLKPSNNVPIeDEV-LFSSNNIEHEYILKEKKNELLELLDNESKADREIFIRKYIFDEDIDNITKKFNLS 158
49477300   82 TKLKALEYKKKVYKENKIDK-----DVEIGTGFHDRYEIEQEEEIMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVT 156
28211460  161 SNAVDNRIFRERKKLRnkfyKNEKEEILYENNI 193
42784367  157 TDTVYSRLSRGRKKIKk--iIGGETDAQRGTVA 187
52143741  157 VDYIYNRISRGKKKIQklwkGSV---------- 179
222095341 157 ADYIYNRISRGKKKIQklwkGSV---------- 179
218234226 157 ADYIYNRISRGKRKLQklwkGSV---------- 179
218234415 157 RDTVYSRLSRGRKKLKkllrGKRNE-------- 181
217959200 157 VDYIYNRISRGKKKIQklwkGSV---------- 179
15895043  161 SIAVYNRLSRGRKKL-----KKVLSVGKEG--- 185
187932352 159 KGAVYNRLWRTRNSI-----IEKLNVSYKKEEA 186
49477300  157 VDYIYNRISRGKKKIQklwkGSV---------- 179
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