Conserved Protein Domain Family
ligD

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PRK05972: ligD 
ATP-dependent DNA ligase; Reviewed
Statistics
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PSSM-Id: 235658
Aligned: 60 rows
Threshold Bit Score: 1171.22
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
91977955    3 AGKTLTLYRNKRDFEQTAEPRGDGKV-APSK------RRRFVIQKHDATRLHYDLRLEYNGVFKSWAVTRGPSLDPHDKR 75  
120611188  23 PPDALADYARKRDFRNTPEPGAEPGD-ALPRg-----ALRFVVQKHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKR 96  
91788863    3 SADLLKTYRARRDFKQTPEPATGGE--RSGK------ALRFVVQKHAARSLHYDFRLELQGTLKSWAVPKGPSLDPAVKR 74  
160899773  26 PQASLALYRQKRDFTRTPEPSAEPSS-ETIAgqpgagALQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKR 104 
73538904   28 PADALGKYRQMRDFAATPEPGGTRQRaRATPkakragTLSFVIQKHAARRLHYDFRLELDGTLKSWAVPKGPSLDPADKR 107 
161611271   2 ARTSLDRYREKRDFRVTAEPGPRTRA-PRAPg-----PLRFVVQKHWARRLHYDFRLELDGVLLSWAVPKGPSFDPAEKR 75  
188591399  17 PSPPLERYEKKRDFSITPEPAGRKAR-RKKPa-----RLSFVIQKHWARRLHYDFRLELDGVLLSWAVPKGPSYDPAEKR 90  
188592127  19 PAGGLERYSKKRNFGVTPEPSGKA---APPRprqeagPLRFVVQKHWARRLHYDFRLELGGVLLSWAVPKGPCYDPAEKR 95  
194292842  43 TTAPLEKYRRMRDFGATPEPSGGTAR-ATPRkr--aaALSFVIQKHAARRLHYDFRLELGGTLKSWAVPKGPSLDPSDKR 119 
116696288  47 APAALDKYRRMRDFGATPEPSGAAR--TRGKvhkragELSFVIQKHAARRLHYDFRLELGGALKSWAVPKGPSLDPADKR 124 
91977955   76 LAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECD-DPERGFKKGDLKFSLDGEKLQGSWVLVRMRHDRNgGKRT 154 
120611188  97 MAVQVEDHPVAYNRFEGQIPARQYGAGRVIIWDKGYWVPLeDPARAWRAGKLKFELHGHKLQGRWTLVRMHGRGN-ERQP 175 
91788863   75 MAVHVEDHPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVgNPAAGLKNGKLKFELHGEKLKGGWTLVRMHGHAG-ESHE 153 
160899773 105 MAVQVEDHPMAYNRFEGQIPPGQYGAGKVIIWDCGTWLPEgDAAEGYRKGKLKFELRGHKLQGRWTLVRMRGKDD-AKKP 183 
73538904  108 MAVHVEDHPLDYAGFEGVIPPGHYGAGTVIVWDRGIWVPDgDADAAYRAGKLKFELRGEKLHGHWTLVRMHGSRQ-KEQD 186 
161611271  76 IAIHVEDHPVDYAAFEGTIPPKQYGAGSVIVWDNGTWEPVgDAQAGMAKGKLEFALHGQKLAGRWELVRISKPGD--ADD 153 
188591399  91 IAIHVEDHPLDYAAFEGEIPPKQYGAGSVIVWDRGTWVPVgDPREGMAAGKLLFDLHGEKLAGRWELVRIAKPGD--KSE 168 
188592127  96 IAVHVEDHPLDYAGFEGEIPPNQYGAGSVIVWDRGTWTPVgDPHDGMAAGKLVFDLHGEKLTGRWELVRIAKPDD--RSE 173 
194292842 120 MAVHVEDHPLDYASFEGVIPAGHYGAGTVIVWDRGTWVPVgDPEAGYRSGKLKFELRGEKLHGHWTLVRMHGSRQ-KEQD 198 
116696288 125 MAIHVEDHPLDYAGFEGVIPAGHYGAGTVIVWDRGTWLPVgDAEAGYRAGKLKFELRGEKLHGHWTLVRMHGSRQ-KEQD 203 
91977955  155 NWLLIKHRDDDAREGKANDILDQ-DRSVASGRAM-TEIAQGKGRAPKPFMTGKAarvkadavwnsKEGLAADERAANGAG 232 
120611188 176 PWLLIKERDGLERDAVEYSVVDAlPDSVKSLPDL-PEPAPARGRQAPAPAASSParrta-argkaAASAPAPAPEPAAGR 253 
91788863  154 PWLLIKEQDDHARPEQVFDVLQAlPNSVLSGKPLpGKAATGTQCAPRAARTRKA-----------APESHAGKHARTTAA 222 
160899773 184 AWLLIKEHDGLERAASEFNVVEDmPDSVAGLPLP-TATAPVTTPVATPVTAP---------------------------- 234 
73538904  187 AWLLIKERDDAAVPASEFDVTEAlPDSVLAGTSA-ARKTTGRRAATNATKPGNG------------------AKDSTKDS 247 
161611271 154 QWMLFKKRDRWARPHAEFDVITAlPDSVVAHPL--GQVEERESSSASPSGTPDL-----------SAAVRAP-------- 212 
188591399 169 QWILFKKRDAWARTLSEFDVLTAlPDSVIAKPLG-ALNAEDGDKESVAVLDEDP-----------ATAVKRAPRAP---- 232 
188592127 174 QWILFKKRDAWARPLAEFDVLAAlPDSVIARPLG---------------------------------AVPEASGVPDQDD 220 
194292842 199 AWLLIKERDDAAVPASDFDVVEAlPDSVLGGTQR-KAAAKRASAGKAATATAAA-----------EAATPAAHEAIRALK 266 
116696288 204 AWLLIKERDETAVPASEFDVVEAlPDSVLGGTQR-KPAAKRAKSAQPPDEAAPD-----------AHGTAKSLKPPRGAP 271 
91977955  233 GAVASKPAppnkakattaksktaksktakvakpkpgrkaaakraaMPDFVPPQLCTSVERPPGG-DGWGHEIKFDGYRMQ 311 
120611188 254 TARAGTSPrpk-------------------------------kaaLPAALAPQLATLVDGPPTDlAEWMFELKFDGYRIL 302 
91788863  223 SARSGKSIpkgipe-------------------------gavksrLPGTLAPELATLVNRVPADpQDWIYEIKFDGYRLL 277 
160899773 235 ---------------------------------------------MPQSIAPQLATLVDHAPADaGQWIFESKFDGYRLL 269 
73538904  248 ARTKPLPLprra-----------------------------taaaLPLALSPQLATLVERAPPDaDAWRYEIKFDGYRML 298 
161611271 213 ---------------------------------------------PPPRLAPQLATPTAKLPSG-SGWIIETKFDGYRLL 246 
188591399 233 ---------------------------------------------LPAKLAPQLATLSPTLPAG-TGWIIENKFDGYRIL 266 
188592127 221 PDQAMRHApr---------------------------------apLPAKLRPQLATLSPTLPSG-TGWIIETKFDGYRIL 266 
194292842 267 PPPGATRAa------------------------------------LPLTLAPQLATLVEKPPPDaAAWRYEIKFDGYRLL 310 
116696288 272 RAA------------------------------------------LPLALAPQLATLVEQPPSDaQAWRYEIKFDGYRLL 309 
91977955  312 LRVDAGEATLKTRKGLDWTARFQAIADQAAGL--PDALIDTEIVALDQHGHPDFAALQAALSDGD--------------- 374 
120611188 303 ARIEGGEVRLITRNGNDWTHRMPGLARAVRALpvESGWIDGEIVVPDRHGIPDFQALQNAFESGRrpgrsaagspddgav 382 
91788863  278 TRTEGDSVRCITRNGNDWTARLPGLAKAVAQLdiRSAWLDGEIVVMNDQGVPSFGALQNAFDSAS--------------- 342 
160899773 270 ARIEDGAVRLFTRNGKDWTTKMPALAHTFAALplQSGWVDGEVLMLDSDSRPDFQALQNAFDGER--------------- 334 
73538904  299 ARIDGDDVRLFTRQGHDWTSRLKTLAREVRALglPDGWLDGEIVVLGKHGETDFQALQNAFETSH--------------- 363 
161611271 247 SRIVDARVHLITRNGHDWTRKLGGLAKEVEKLdiSEGWLDGEIVVL-RDGLPDFNALQNAIDSHR--------------- 310 
188591399 267 ARISDAGVTLFTRNGHDWTRKLASLAAEIEKLdiSEGWLDGEIVVL-RDGVPDFNALQNAIDGHR--------------- 330 
188592127 267 ARIDDARATLFTRNGHDWTRRLISLAAEIEKLdiSQGWLDGEIVVL-RDDMPDFNALQNAIDGHR--------------- 330 
194292842 311 ARVDGKDVRLFTRQGHDWTSKLRALARDIGALglPDGWIDGEIVVLGKHGQTDFQALQNAFDTSR--------------- 375 
116696288 310 ARIDGKDVRLFTRQGNDWTSKLRALARDVGTLglPDGWLDGEIVVLGKHGATDFQALQNAFDTAR--------------- 374 
91977955  375 -TDNLICFAFDLLHADGEDLRALPLSDRKRRLQELLTAArgrRKQgLIRYVEHFDTGGDAILQSACKLSLEGIVSKKLDA 453 
120611188 383 dRSGLVFYVFDLPFLNGHDLRGLPLAERRQALRTLVAEA---GSD-TVRFSDAFEASPGELIASACRLGFEGVIGKRVSS 458 
91788863  343 -TADIRYYVFDLPFYDGLDLRQVPLAQRREILRTALTRN---PQD-SIRFSEAFDQPPQDLIDSAQRLGLEGVIGKRAAS 417 
160899773 335 -TDHLVFFAFDLLWHDGQDLRPQPVEQRRQQLQALLHKA---PSD-RLRFSEAFDAPPADLVAAACQLGLEGVIGKRRGS 409 
73538904  364 -VESIQYFVFDLPFYAGHDLRKAPLSERRALLRRLFENN---TGT-RLRFSEEFEAAPDEMLDAACRMKLEGVIGKRIDA 438 
161611271 311 -TESIVYFLFDIPYWEGRDLRRVPLRERRAHLARLVDARs-----eRVRFSESFEAPADQVFQAASQLGLEGVMLKRADS 384 
188591399 331 -NDAIVYFAFDLPYLEGRDLRSLPLVQRRAQLAALVAERt-----eRVRFSEAFDAPATQMFQAACQLGLEGLMFKRADS 404 
188592127 331 -HEAIVYFAFDLPYWEGRDLREVPLMQRRAKLAALVAGRs-----eRVRFSEAFDAPPAQMFQAACRLGLEGLIFKRADS 404 
194292842 376 -VEAIQYFAFDLPYFAGHDLRKVPLVERRALLRRIFGHN---ASP-RLQFSEDFEASAGDMLDAACRMKLEGVIGKRADS 450 
116696288 375 -VEGIQYFVFDLPYFAGHDLRKVPLVERRALLRRIFAHN---TSP-RLQFSEDFEAGPADMLEAACRMKLEGVIGKRADA 449 
91977955  454 PYRSGRSDNWTKAKCRAGHEVVIGGWKTNAGK---FRSLLVGVHHDD-HLAYVGIVGTGFGQDVVKRLLPELKAHAAKDN 529 
120611188 459 AYGSGRSADWIKLKCGQRQEFVIGGYTDPQGTrtgLGSLLLGVHGDDgQLHYAGNVGSGFSERTLTTLLGLLRSLAADRS 538 
91788863  418 PYVSRRSPDWIKLKTRLRQEFVIGGYTEPKGSrtgLGALLLGVHDAQgRLRYAGNVGTGFNAETLRSLKERLSTLHSERS 497 
160899773 410 AYASRRSADWIKLKCGLRQEFVIAGYTDPQGTrtgLGALVLAVHGEDgQLRAAGKVGTGFNRRTLADLRQRLERLATGTS 489 
73538904  439 PYVSTRSNTWIKLKCTQRQEFVIGGFTEPKGSrqgLGSLLLGVHDSAgRLRYAGNVGTGFDTRSLASLREQLDAQRTDKA 518 
161611271 385 AYSSSRNADWLKAKCRLRQEFVICGYGDREGApgeVGRLMLGVYEDG-QLRDAGNVGTGWDSKTAAALRTQLAKLKTDTA 463 
188591399 405 PYVSARTQSWLKAKCKLRQEFVIGGYSDREGSrteVGRLYLGVYADG-ELRYTGGVGTGWDSAAATDLRKRLVKLQVDKS 483 
188592127 405 PYVSARTQSWLKAKCKLRQEFVIGGFSDREGAaaeVGRLYLGVYADG-ALVYAGGVGTGWDSATATDLRKRLAALKVKDS 483 
194292842 451 AYVSARSNTWIKLKCTLRQEFVVAGFTDPKGSrngIGSLLLGVHDTGgRLRYAGNVGTGFDTRTLDELRAQLDALRADEA 530 
116696288 450 AYVSARTSTWIKLKCTLRQEFVVAGFTDPKGSragIGSLLLGVHDSGgRLRYAGNVGTGFDARTLGALRTQLDALRADSA 529 
91977955  530 PFAGENAPRKTAD------VHWLAPELVAEIEFAGFTGAGMVRQAAFKGLRADKPAGEVEAEEPAKVDIAGPKPGRRAKP 603 
120611188 539 PFAEGTQVGRKAH--------WVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATVAGPSPTPPAA 610 
91788863  498 PFAALPTGVKGQ---------WVKPQLLAEVAFGEWTHGGHIRHPVFQGLRTDKPARNILRETPTSPVTPRKGSDMPQDA 568 
160899773 490 PLADSRGLGSGVH--------WVRPTLLAEVSFAQWTEDGQVRHAVFQGLRADKPARSIVKEEPQHVPSTASSASAAATP 561 
73538904  519 PFHELPSSIKGL---------WVRPRLVAEVSFGSWTREGRVRHAVFHGLRSDKPASAVSVEKPAAPAGRKTAATTAARS 589 
161611271 464 PFAAASKGRSRWGsnrnstPHWVKPSLVAEVEFAEWTPAGQVRQASFKALRSETPARDVRREAVQVEPGST--------- 534 
188591399 484 PFSTEARASRRWGgrrataVQWVKPTLVAEVEFSEWTPEGHVRHASFKGLRTDHAAKSIRREAVQTAVTPHG-------- 555 
188592127 484 PFATEARGSGRWGgrrpavVRWVRPKLVAEVEFTEWTPDGQVRHASFKGLRTDHTVKSIRREPVQTAVTPHG-------- 555 
194292842 531 PFHTVPAGVRGH---------WVKPRLVAEVSFGNWTREGRVRHAVFHGLRTDKPAAAVSVEQPSVPAGKGKAAATTRGK 601 
116696288 530 PFENVPAGVKGH---------WVRPKLVAEVSFGSWTREGRVRHAVFHGLRTDKPARAVSVERPATPAANGKPAATTAKH 600 
91977955  604 SSNAKSAKPktatpnagrsktrathasRAE-VMGVVISKPDKELWPASRigdaVNKRDLAHYYEAVGDWMIPHLEGRPCS 682 
120611188 611 PRPASSEATpsrarstmtsrrtasapsPASpPSSLRVTHGDRVIDAASG----TTKLDLVRYYALVAPLMMEHLRQRPVS 686 
91788863  569 ATPGPTSRKtrd-------------kaPGKaPESVRITHPDRVIDKTTG----FTKQAMVEHYAAVAPLMLPHLKGRPVA 631 
160899773 562 GAARTQTRNar---------------aARL-PASMTITHPERVIDPSTG----ITKMDLARYYATVAPFMITHLKSRPVA 621 
73538904  590 APATTRKGKp-----------------TAA-NGKVAISHSERVIDTASG----LTKGDLVRYYESAAPLMLPHLRGRPIA 647 
161611271 535 -------------------------------RAAVKVTHPERVIDATTG----ITKLDLVRYYESVADWLLPHLMARPVA 579 
188591399 556 -------------------------------MAAIKVTNPERVIDKTEG----ITKVELVRYYESIAMLMLPHLKDRPLS 600 
188592127 556 -------------------------------VAAIKVTNPERVIDRSKG----ITKVELVRYYESVAAVMLPHLADRPLS 600 
194292842 602 PASTPASRSkpga----------arrpTAV-GGKVSISHAERVIDAESG----LTKGELVRYYERAAALMLPHLRGRPIA 666 
116696288 601 AGTRPKAAAkr---------------tTAA-GGKVAISHAERVIDTASG----LTKGDLVRYYERAAPLILPHLRGRPIA 660 
91977955  683 IVRAPDGIGGEHFFQRHAMPGMSNLIALAKVA--GDRKPYVQIDRVEGLIAAAQIGGLELHPWNCAPGRYEVPGRLVFDL 760 
120611188 687 VVRAPEGVGGELFFQKHPEHGSVDGVRTLDPAldPGHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDL 766 
91788863  632 LVRAPAGVGGELFFQKHAQATAIPGIKLLDPAldPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDL 711 
160899773 622 MVRAPDGIEGELFFQKHLDQAPLQGIAALTPEldPGHAPLMEVSRREGLVAAAQMNTIEWHTWNARKDRIDRPDRMTFDL 701 
73538904  648 MVRAPAGVAGQQFFQRHGDTLKIDGVNVLDPDlwPGHPALLEIVSEHALVAAAQLNVVEFHTWNANKRSMDRPNRIIFDL 727 
161611271 580 LLRAPDGIGGELFFQKHAETTKLPGLTEQPASlwPGHSRLLTIDSAEALAGAAQLNVVELHTWNSTAADLAHPDRVIFDL 659 
188591399 601 LVRAPEGIDAPTFFQKHAET-AMPGLTERPASlwPGHAALLTADSAEAIVAAAQMNVVEFHTWNSTARDIDHPDRVIFDL 679 
188592127 601 LVRAPEGIDAPTFFQKHAET-AMPGLTEQPVSlwPGHAALLTADSPEAIVAAAQMNVVEFHTWNSTARDIDHPDRVIFDL 679 
194292842 667 MVRAPSGVGGEQFFQRHSDTLRVDGLNVLDPGlwPGHPALLEITSAEALVAAAQLNVVEFHTWNASKRSIDRPNRIIFDL 746 
116696288 661 MVRAPSGVGGEQFFQRHSDTLRVDGLNVLDPGlwPGHPALLEIASAEALVAAAQLNVVEFHTWNAGKRSIERPNRIVFDL 740 
91977955  761 DPAPEVGFDAVIVAAREMKDRLEAIGLPSFCKTTGGKGLHVVTPLVpsDDIDWKQAKIFAQTVCAGMADDSPDRYLLNMS 840 
120611188 767 DPGEGVPWDKVQEATTLMRVMLTELGLPGFLKTSGGKGLHVVVPIK--RLYGWDAVKGFSQAVVQHMARTIPQLFVAKSG 844 
91788863  712 DPGEKVGWPEMQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLR--RSHDFDTVKDFSHAIVKHLAGVLPQRFVAKSG 789 
160899773 702 DPGEGVPWQQVQEAASLLHVLLQELELPAFLKTSGGKGLHVVVPIK--RLLDWDTVKAFSQAVVQHLAHAVPQRFVAKSG 779 
73538904  728 DPGEGVPWPHMREAAALMKAWLDELGLASFLKTSGGKGLHVVVPLT--PRAGWDEVKEFAHGVVLHMAVTIPQRFVAKSG 805 
161611271 660 DPGEGVSWQHVQEAAILVHTLLGELGLAAWLKTSGGKGLHVVVPLV--PELDYDAVKSFSRAAVLHLAKTLPQRFVARSG 737 
188591399 680 DPGAGVAWETMLEAAMLVHALLDELGLQSWLKTSGGKGLHVVVPLA--PQHSYDEVKAFSRAAVQHLAATLPQRFTARSG 757 
188592127 680 DPGEGVAWESMLEAAMLVRTLLDELGLQCWLKTSGGKGLHVVVPLA--PRRSYDEVKAFSHAAVKHLAATLPQRFTARSG 757 
194292842 747 DPGEGVPWAQVQEAAAMMKALLDELGLASFLKTSGGKGLHVVVPVT--PRAGWDEVKDFARDVVLHVAATLPQRFVAKSG 824 
116696288 741 DPGEGVPWPQMQEAAALMKALLDELGLASFLKTSGGKGLHVVVPIT--PRAGWDEVKAFAHDAVRHVAATVPQRFVAKSG 818 
91977955  841 KQQRKGKIFLDYLRNDRMSTAVAVLSPRAREGATVSMPLTWTQVKAGLDPKRYTVETVPALLAK---TKAWADYDKAAAP 917 
120611188 845 PRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVATVEDRLREg--NAPWDGYAKAAVS 922 
91788863  790 PKNRVGRIFVDYLRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGAHWTATTIGGRLATg--NQPWKDYGARANG 867 
160899773 780 PRNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVAWNELDRLTGGAHWTIRSVDQRLRLg--NSPWEHYGTAAVG 857 
73538904  806 AGNRIGKIFIDYLRNGVGATTAAAFSARARPGLGVSVPLAWDELDGLEASDQWTVANVAPRLDElarHDPWDTYADTRQT 885 
161611271 738 AGNRKGRVFVDYLRNGTGQTTAAAFSARARPGMGVSMPLSWEQLPQLKSADQWTVRNAREYLSFr-tNDPWSDYWSTTQS 816 
188591399 758 ATNRKGKIFVDYLRNGFSQTTAAAFSARARPGLGVSMPVSWEQLPKLKSGGQWTIRDAREYLSFq-vADPWSSYWETPQM 836 
188592127 758 AANRKGRIFVDYLRNGFSQTTAAAFSARARPGLGVSMPVSWEQLSRLKSGAQWTIRDAREYLSFq-lADPWQSYWQTRQT 836 
194292842 825 ARNRVGKIFIDYLRNGMGATTVAAFSARARPGLGVSIPVAWEELEALTSATHWTVANVEARLDAleaADPWADYAGTRQA 904 
116696288 819 PSNRVGKIFIDYLRNGIGATTVAAFSARARPGLGVSMPVWWEELDSLQGAAQWTVANAGPRLDAvaaDDPWADYAETRQA 898 
91977955  918 LKAAIKKLA 926 
120611188 923 ITQAMKMLG 931 
91788863  868 LAEAMKKLG 876 
160899773 858 LGRAMKALG 866 
73538904  886 ITRAATRLA 894 
161611271 817 LQDAMEALG 825 
188591399 837 LTDAIERLS 845 
188592127 837 LTEAIERLS 845 
194292842 905 ITRAAGRLA 913 
116696288 899 ITRAAARLA 907 
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