Conserved Protein Domain Family
PRK05949

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PRK05949: PRK05949 
RNA polymerase sigma factor; Validated
Statistics
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PSSM-Id: 180321
Aligned: 14 rows
Threshold Bit Score: 556.379
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
166364164   1 MPTAKTNQTQSQPT---------LNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEW 71 
16331222   18 MPTANLSSPTSPPT---------FTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEW 88 
298490639   1 MPTVNTQTENLNTK---------FTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEW 71 
75908126    1 MPTVNTHTEDTNTK---------FTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEW 71 
17231292    1 MPTVNTHTEDTNTK---------FTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEW 71 
186684216   1 MPTVNTQTENLNTR---------FTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEW 71 
113474616   1 MSKLNQENKNQKKTqtkfgpttySSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLEW 80 
172035560   1 MPTANVNTKTKQPT---------YSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEW 71 
218439771   1 MPTAKVNPKTQKPT---------FSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEW 71 
220907004   1 MSTLKTKTQTRDSM---------VSTDMVRTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEW 71 
166364164  72 ADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
16331222   89 AEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
298490639  72 AAHVNQSETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
75908126   72 ADHVQKSETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
17231292   72 ADHVQKSETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
186684216  72 ADVVQQSETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
113474616  81 AEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 160
172035560  72 AKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
218439771  72 ANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
220907004  72 AEQANLSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
166364164 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQIREYLSMARQPISLDVRVGDN 231
16331222  169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQIREYLSLSRQPISLDVRVGDN 248
298490639 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQIREYLNMARQPVSLDVRVGDN 231
75908126  152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPVSLDVKVGDN 231
17231292  152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPVSLDVKVGDN 231
186684216 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKELELEPAQIREYLNMARQPVSLDVKVGDN 231
113474616 161 IRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELIQSLGRSPTPSEIAQALELEPSQIREYLLMARHPISLDLRVGDN 240
172035560 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGDN 231
218439771 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEIAKALDLEPAQIREFLSMSRQPISLDVRVGDN 231
220907004 152 IRQAITRAIAQQARTVRLPIHITEKLNKIKKAQRVLSQRLGRSATPAEIAQELELEPSQIREYLTLARQPVSLDLRVGDN 231
166364164 232 QDTELSELLEDSGVSPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQAL 311
16331222  249 QDTELSELLEDEGVSPDAYITQESMRQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQAL 328
298490639 232 QDTELQEMLEDEGPSPEYYTTQEFLRQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311
75908126  232 QDTELQEMLEDEGPSPEYYTTQEFLRQDLNTLLAELTPQQREVVALRFGLLDGNELSLAKVGERLNLSRERVRQLEHQAL 311
17231292  232 QDTELQEMLEDDGPSPEYYTTQEFLRQDLNTLLAELTPQQREVVALRFGLLDGNELSLAKVGERLNLSRERVRQLEHQAL 311
186684216 232 QDTELQEMLEDSGPSPEYYTNQEFLRQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311
113474616 241 QDTELQELLEDETSSPDDYITGELLRQDINTLLAELSEQQRRVLVLRFGLEDGKEMSLAKVGDKLQLSRERVRQLEHQAL 320
172035560 232 QDTELSELLEDQGVSPDIYITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQAL 311
218439771 232 QDTELSELLEDEGISPDNYITQELMRQDLHDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQAL 311
220907004 232 QDTELRDLLEDDSPSPEQYTTGEALRDDVNHLLAELTPQQREVLTLRFGLEDGKELSLAKVGEQLSLSRERVRQLERQAL 311
166364164 312 AHLRRRRANVKEYIVA 327
16331222  329 AQLKRRRANMAEYIIA 344
298490639 312 AHLRRRRANVKEYVAS 327
75908126  312 AHLRRRRANVKEYVAS 327
17231292  312 AHLRRRRANVKEYVAS 327
186684216 312 AHLRRRRANVQEYVAS 327
113474616 321 AFLRRRQAKVREYVAS 336
172035560 312 AQLRRRRGNVKEYLAA 327
218439771 312 SQLRRRRSNVKEYIVA 327
220907004 312 DHLRRRKLQVREYLAS 327
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