Conserved Protein Domain Family
PHA03334

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PHA03334: PHA03334 
putative DNA polymerase catalytic subunit; Provisional
Statistics
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PSSM-Id: 223049
Aligned: 5 rows
Threshold Bit Score: 2002.43
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
282174092    1 MDFKYYAVFADRL----------------VQQKCATDAQDGDIFYTVSIRAVEDRLRVVGCFPDTCETACLWI------- 57  
131840105    2 QAFKLYEAFSDYLpk------------qvTEQEFDRGDGDNELMYVASVRLIEESFRVWACWPDSGRKKCFWI------- 62  
95116636     3 RNAVLYGVLEHRLpkwvelsddtdlepffFSSVRYITAGSEDAIMIQALNLNTDEIVVF--------------------- 61  
109638611    9 SKLTFWDLYSDRLpkvdr------cdpetHVPVFISSVQKADMNLCIHLNVIRESPEAHAATLWAARIKQVLF------- 75  
109638464   20 AEGSYYVLARHRLpa------------------srKRGPNDALVFFACLRLEQGGFRCRVCEVCDGKEQDIGVcgdvvet 81  
282174092   58 ------------------------EPI-YCPLVLDKAYSAYLESKPQlmalvsCTASTLPGPERVNLVLNNGDTKEDVSV 112 
131840105   63 ------------------------RPVwWPCVMSDRVYELVGRSKPF------ALASTRSLPQVGGVWLNNADTKQDVRC 112 
95116636    62 -------------------------------LVTNLNFMALIPTVYIenpgirQLIASTPISYRSPITVFNGDLKKWMDC 110 
109638611   76 -------------------------PLsFAGLSEEDCQRLRLPGVVYpndaitTLQENLLAHSQN---VFNGDTKEYVDS 127 
109638464   82 gvnaeptspcatacpkakslkcaaKPReWNCLITGLLFPLYVPCEHLd----aLRARFGQLDELGDIAVFDEDNKCERTC 157 
282174092  113 TMYLFEKKADRKRVADHLRQALPAV-PDMGTFDSLTNNMGGAADCIYNRVYCCNFYRLKRDKiratdvgsngADLSGTIK 191 
131840105  113 RLILFKNKRERQVFINLLRKEFPND-ADVGTFEGSDSDMMGMAECILNRFLCCHFYRSPGFVsd-------pASDNPVIS 184 
95116636   111 DLFVFGTMAAQKAFIKAGNSVLGSLgGNVYTYGDHVSNFDGNTPVLQNNLMCSHVYYTRYKT--------------DVYA 176 
109638611  128 TQTVAFYNTND---FKSAKKLLESRrATVLSFVRNNQLHDTNAIALLNRIALRCYGLAKHLV------------GAEVIE 192 
109638464  158 RVVLASTQCEADAF----ARHLCVNgADCLSVHRQ-SNIDGNITAINNKLRIGCYLVPLSVC----------DSRPNSLH 222 
282174092  192 LRDLTFDEDLDRTLYNDHFFSrdeavlkqnhilyhtdrqayerkkvagelavgkpnpssgigrrVPELVYRCGHFDFETV 271 
131840105  185 LNELWSCDAADESLYNVHFNFrdevllrklkeagalgrqee----areleakraqavatmprrlVPELVYRCAFFDIECV 260 
95116636   177 PWEFYYDQKRDQGYLMSLPA--------------------------------------------IIPRCKREGAFDIETI 212 
109638611  193 LTDLVMCDLLDTATLSCNHPD-------------------------------------------VYKTPYVEAAFDIECL 229 
109638464  223 LTALGIDEGEESDAFARLHPH-------------------------------------------IYRTPFRAASFDIETI 259 
282174092  272 FDEQNLDPKLHPEKDETFAEDKA--IKDRIK------KCgLVGSFLPAPRASKLRGYKEVISVSLVYRTDTCALFRQGKk 343 
131840105  261 FDSDHLDPNLDVGLDPTFAADLK--IEARVK------SC-FIKDFLPPRNTSNLRGYKEVTSVSLVYGGNERDQATGRKv 331 
95116636   213 VHENAMDQDLNCQK--FFKSEFR--SMEESQvliqrfREaGVTGLPPSPFVGITQKLHEIVSISLVVCNYHKTGPKKKE- 287 
109638611  230 IKHESSSNYLPQKPEAYRSNAYNtfVRLRNRhadlklFCkAAELNLPPMPLTML-DPGEITSISLVKKTTKPKK------ 302 
109638464  260 VDRKRYAPNYTVSP-LYVRNAAA--ISDRNN------IHaSTGVLLSHTSINPL-DYGPITSIAVVLADTKPKR------ 323 
282174092  344 gqkmRRVWYNASRVDGVgaeprhAPYVKGSHEDCVT-DCEIIACDSELDLLVRFLAEVAQYVDVLFVYNYDFDVAVLHSR 422 
131840105  332 ekkiREVWYNAARVQGP------GPIKDDSCGDVVTlNGVLTSCASELEMLVRFMRAVRDHCDVLFVFNYDFDVMVITSR 405 
95116636   288 ----YYVYYNTKKMENPmemipvEHLHLDAS------RIKFEACKNEFYMLLAFINRLRKSVNVLYVYNAQFDIQVIQQR 357 
109638611  303 ----RMVFYNAALTKT-------TPLSLAED------RVEFVSCADEYHLLLQFLTQLKE-VNILYVFNAEFDVGLVWAR 364 
109638464  324 ----RYVFYNGQLAGC-------EPVPVQGSYWVSS-HLQLVRCADEAEVIGAFLKHIES-VTVLYAYNVEFDVRVIAER 390 
282174092  423 LNFYQTVWP-----------SLPLTRKLTEMYDSVFSCDPKNVPPHFYFSDQRYNSMYCDLLDVVEKHMDAFKALCRtri 491 
131840105  406 VNFYRSVYP-----------EDPLTSELVELFEQAFSKDPRMVPADFTFLDNKHNACYSELLDTIDKHKEGFFAACR--- 471 
95116636   358 LRYYAFKQRaprcckghddiPHEWGKALMEKWEAFLSVKPQLFKAQILMGQDILKANYLKLLEGIGSVLAQAKSTMA--- 434 
109638611  365 LQYWKGKVS------------PRDAEALHKAWSDFTCKYKNPLPLTLQFASEYLFSHYDTLLSALESAKKLCWNEKE--- 429 
109638464  391 VSLYAATGR----------------AELGRAWQRFLCKDGAATSPQLIFQSDTLLSEYRELIHVARTTIAREHDVGR--- 451 
282174092  492 sqnRAAQRKVQQGLFdsvsspagtsgddIVTKRLMYDYppyrtairNHNDQVILNSTVHGFGKYVIDLMKLNNTRSMKHI 571 
131840105  472 ---KAGAARDERGCL-------------VITRTHVSDFfpyqtawkKFMDNKQLNSTMRSLGVYIVDLMKVNNTKSVKSG 535 
95116636   435 ---KMCTIKERIDSY-------------RKMKDTVQNF------------------KSHGFGCDIIDMMYVCKRKEFEAK 480 
109638611  430 ---QSMARVLEDNHY-------------MSLRKRIVAY--------NDNSKKYPHLTFNCFGAHIIDLYRVCYSYDINFH 485 
109638464  452 ---RTAACRAANKIF-------------MEKRDKMQTF------------------RLVGFHAHIIDLYRLCHTQPITNA 497 
282174092  572 ARGfSKLEVVARAIIGDARPYKNPFKMGKIQGVKYTEMDGIFKRG-GAGLTRLLYYNLVDSELLARIVRYAAPHIEFISR 650 
131840105  536 ASRfVKLETVANTIISKSRPFKCPHKAGKIKGVAYHEMDAMFFKG-GKDLWKYLMYNLADSELLARITRFTRPHIEFVCR 614 
95116636   481 DGS---LNTVAQLIIKKFKPHKATPKIHKMDDITYDKLDGYYRAG-GTKIAECLIYNLIDSLLVIRIAKNLKPMEEYIYR 556 
109638611  486 CSA-RSLDAISAFLIPKSFPKKHSSKCRKMADVKYTEMDDMFTCGdPAALRRYLLYNLVDSELLMRLAKTQDVVSNFLNR 564 
109638464  498 CKD-RKLDTVARHMLSTAKPNKNRCKIQKVGDVHYSEMDAIFTGNdGAALYRYLVYNATDAELVIRMVKLIDPVQGFLNR 576 
282174092  651 LRATLNVDYVCHGRGTMDFSGaMVQSTKSVEAPLLRAKLKENRFFAAGRAFASMCLTEKYASaQSRKTLTLKGGKVFQPT 730 
131840105  615 VRATFGLDYVSLGREKVEFSGaMVQSTKSVEAPLLYSKVRIGRFVATGKNFASVAMGGKYASiDYRRNIKVKGGKVFQPL 694 
95116636   557 QLACYNIDTAAHTRGVMNFCG-FIQSTKVVEVSRNKARLDAGIVMATDYIRNSLFTPETIPR---------RGGFVMAPL 626 
109638611  565 TRVSMNVDCVNTGRADMYFCG-FVQATKLAAMPLLNARVLNNIMCAQEWQAESKCFPDQFKP-DCPVRPKLDGGYVVAPI 642 
109638464  577 LRATKNIDIMHYGRGNYKFDG-YVQSRRAVEVPLATVRLRIDKAVSLARGAEDRLMPAIYRR---GQKIEIKGGYVAEPL 652 
282174092  731 IGLTYTGPYVGTVCTYDFASLYPSNMCDANISPESIVs-rDPSCRAFVVNKVVLDWKRMPaisglienREYGEAENLYTI 809 
131840105  695 LGMTYTGPYIGTVCTYDFASLYPSNMCDGGISPESIVskmDPFCLEYVRNTVMLDWKKIPaasnmeeiRDYPHSEDLYTI 774 
95116636   627 TGLFFARPTQCFELCLDFTSMYPSMMCDLNISPETIV---DSDKTNRVGDYMGYDWSKID--------QGFEKFTLVLRV 695 
109638611  643 TGLSFAGVLTSVELTLDFSSLYPSNMVDCAISPDAII---DETHASRFQGWVLFDWKKID--------GRLKCYTLMY-- 709 
109638464  653 TGLTFACEKQGPEVTLDFASLYPSNMMDANVGPDAVL---DVRRVAQFRGWIVFDWRQIE--------EGFGLASLMY-- 719 
282174092  810 LLHKSVETGWTRFTTYTSSSLRHYLSMRNKYKGDMKTAKSPG-LKKYFNQLQNEMKICANSHYGVSDRICQMLTTLSGRQ 888 
131840105  775 LCYKNKEVGWVRFETYTASSLNHYLSMRSQYKKRMKTEKDAG-LKAYYDQMQGEMKVCANSHYGVAQSLCQHLTTWSGRQ 853 
95116636   696 DRTDPENPKLVRHTSDTSLSLKRYLRLRTEHKRALKQSSGS--VAEYHNRLQNEMKICTNTHYGVSEHTCSLMITTQGQH 773 
109638611  710 ------EPSGRRHPTITTSSLHNYLSMRKHYKGLMAKTTDPK-EKSFYNKMQTEMKLAANSHYGVAPEASKHLITALGRY 782 
109638464  720 ------TPSKRRFLTTTTGSLNSYLSMRANHKQAMTQAGDNKaLYSYHDIQQSEMKVCANSHYGVAPGACQVLITGLGRH 793 
282174092  889 KILIVEDVIK----KTPGMTVIYGDTDSIMFQVPPSDREVMNTNTFKpisvetv------etvetvETVDAERITHYTKL 958 
131840105  854 KILLVETAVK----KTPGMTVVYGDTDSVMYQCPPAEMNPLDVDTVR-------------------EDVSAEAVNLYTKG 910 
95116636   774 KIKLVNEFIKtlnrTGHSLFPNYGDTDSTMLYHPSDESETQLEDMVTledemra-----elreymlKKLSAELVNRVKE- 847 
109638611  783 KIKSVIGYLE-----ESGHLVNYGDTDSVMCHLPQEDALLYTADddted------------splplEEWTEGRLNSIRH- 844 
109638464  794 KIKIVERFIK-----EAGFVHNYGDTDSVMFDLP-CDARCYEPDIVPvvesemqplfgsyeggataEEWLCGAEAHVQDA 867 
282174092  959 KTEIEGETVHAVLKQLNVEIYDYMAARMIH-FDQDGKQTMMQHETDpktgekAWFFEDEDGsggrRKHYLRDLLDNSLIT 1037
131840105  911 KTREEGETVQRILRDLNDRLYEFMAERMVY-VDDQVNVRPLSRCPEtk---hFYLTDSVDG----QRVYLKDIFDRTLIT 982 
95116636   848 KTKRTDTFVQSFLSDVETVLFDDMVEKLRL-FSQGEVIEPFKDGGT------WWVVDPLTG----IWMDCSTPFSSELIC 916 
109638611  845 CVRQQFEHFAPTLEDIDRRLTDAMIDCLCF-VNEEGSVVPIRKTED-------------------MLTIVGEEFRESCIS 904 
109638464  868 LGKRATAAVPGILTRLHTVLLDDFITHLRYvVPENGSLIPVVGSE--------------------HETWVRNTFSKESVT 927 
282174092 1038 NLAYENTATVTMNLTKKMYVYTNHE-LDEGVLTNTKEKMRGVQAVKSSAAGATKDFNTDIISVIFKGWALRKNKEFMSLr 1116
131840105  983 NLAYENTATVSINMAKKNYIYTNHE-LEDGVLTKTKEKLRGVQAIKNNAAGATRDFNNDMVYACFRGWAIVYASTFGNIn 1061
95116636   917 KLEYENASSIGCHVAKKMYLSLVHE-LNNGEIINTKIKKRGMTGFKSSRFGATESITNDFMDLIFNGGALVKTGHLEAL- 994 
109638611  905 KLCFEVYSSIITRLNKKMYICTAHEpEGDDPFGHTAIKMKGLVANKSSSSGAARRITDVYVNLICKGHALRVVKDFDHL- 983 
109638464  928 KLCFENMSTVTLRLQKKMYVNLTHVpLPNDPVGTCKVKARGMLANKSSAVGPERRIERALVNLIMKGGAIRVCENFERL- 1006
282174092 1117 nlyQAVPWFKVNRGDLILVVPDNPVFDDHQACTNYDVLKTEWCEVLDIKRTAPKDKRHYVIHQLTLRQLTkksggdAKKF 1196
131840105 1062 gmiSYKSWGSVREGDDVYFCTTAPEFDEWHACTNYEKMVCEWCRVVSCLTEPAASSAEYSMHRLVLRKPD------GVEF 1135
95116636   995 ---KPVTWAKLSAPADI-LHFSEPPVYENGICLNMNSITLIPHRVTAVTRLPCPDIKGGELVYVDLHEST------SGKS 1064
109638611  984 ---QCTPWHRLKAGDVVKLGQSDSPVVEVRVVKE--------------------AAFGYLGVEVKFAEST---------- 1030
109638464 1007 ---EAVTWNSVVPGDLV-------------VCTPGKHVRVCGVRVAASGSRVCREITFIGAQSVRIFEDR---------- 1060
282174092 1197 QYTCATDANHFNMTHTFSLTEQIRRNVLAVEAAKYRYWSVSAGFTD-WRSLVAYSGLNMLKNPELERKFQRMNAHNLKNN 1275
131840105 1136 KYVCASDSNNFNMTHTFSLAEQIRRDAVALNLIKFRYWSASAGFTS-WRSLIQYSGLQTFKQESLKVTFNEYGAVNTKNN 1214
95116636  1065 SVLVLVLADGCALNHIFSSANVLHRELSFETIAMFRAFFVGAGFLD--PNSIVFYERIPRLKPEFLSKITNYELFTGKKL 1142
109638611 1031 -LRFITTSEGINLTHMISRAEQRRRCQTYTSYAIYESFANNAGFNSdWQNTVKYIKPSSPYSANLKINRALVGLDVPSEG 1109
109638464 1061 -------VTGISLNHLLSPSHGRARCFAFYHMCRYIAFATAAAFVDrWSDNVQFV-YAARQTAYQRASRLALGLGDAKQS 1132
282174092 1276 KVAYVSVDPLtsgl-----------anaGKDVKQVPYEAFLVGMMFDVKPDILDRDMWGEShirmagfepeqlfealafp 1344
131840105 1215 KVAYVTVETLcr--------------vdAEYKKQVPILSFLKGFRFDVKQNVMDRDMWGSSsihlhdltvddlmaalewp 1280
95116636  1143 KIPFVTLHKRkttiqaivkedkkqidypEEWIKQDPAMAMFRRYPIDLRLERMIMDYFGSG------------------- 1203
109638611 1110 KMPYVDLVPApndvynkticaakskdanKRFIHQDCAAAFLGRFYVDMDLKFIPY-MFGAT------------------- 1169
109638464 1133 RIPFVKLAKLfngvyts-----nnvrkvKGCERQDPAAAFFHRYHFDTHGHVVLRDTIGAA------------------- 1188
282174092 1345 elvre--------------------------------------cerdnqdeceeseaededpdcssgRICGEPRAGPIQN 1386
131840105 1281 dvirdaewrgqseeavasderqdseqmkllrdmkagelarakakkpkrakkgtmdafltdeeeerveVPPLRTSGVPAEN 1360
95116636  1204 -------------------------------------------------------------------LKCTLATFTPPKY 1216
109638611 1170 -------------------------------------------------------------------------TNTNNVD 1176
109638464 1189 ----------------------------------------------------------------------------APTV 1192
282174092 1387 RLLKDRAIGRLHPTGLKHALSLCLCTSE-----TNYGTHILLDSICPKINHTPYGWPLHDRLRQG----MAYIKATFDAT 1457
131840105 1361 HIARDRRVPPFHPMALKHALSLAAVTED-----TNYGVHLLFDMFVPKTGKVPVGWPLRTKLERG----LAFVRDTYDHM 1431
95116636  1217 TVSGERSR---HSIVIKNHVDKHYLNDN-----SKFLAHVVMDRAMPTTCYIHDDIDVKAMIQSVisrvVRMIQDTQVRL 1288
109638611 1177 NVVRNAKNMRPHTANSRSWIKMNTHKEVmgkpvSNFLVHVILEECCHMSCT-----PTPKEQKDFsvsaKEACKSVRDQM 1251
109638464 1193 RTGKTPDHGEAARTLYKHTVHISMFDQDk---rTKLLAHALVEATTPTSGYNAQSFEAT----------LHEARAAHQSI 1259
282174092 1458 QAFKKRGQILFRKFHRTPVRTGplyglSLDRADMTQPTLLEEDWRDVPLLNLYERNKdegergafLLEDLLTLHAKLVK- 1536
131840105 1432 RLLKDKGQAVFSMVYSTPVKTD-----LLDDVDFEETFVRPVNFGEDNVMRILTRPE--------IMRALLDSNRELLAk 1498
95116636  1289 QELSAAGNKLFHMFFNQLPPEMnnldiSFKYNPLVDHALQGQK---GVPGLQYGNPEqiytdmitEMTALLPRIGHMVEf 1365
109638611 1252 ELMAAKGSHYFSSFFKEMPKDMggvlgHINRLNFTITFTLPKN--------IYGDFNpsr--dlnLYVDMLQALGRLLEl 1321
109638464 1260 KTLAALGAGFHARYFNVPPPDIai-nnGISIRSFFVRSTRKLGDSGRIPIVLYGEEFdaa---arASEAYVKARDEAISa 1335
282174092 1537 -DLAPSGEKRSDPSISLPAYLALFF-----------PesYRLVPLPSDPIDPDMIRCCEALYTFTVLLGYAKArYPLSVF 1604
131840105 1499 -KLSSTVGKFTHENLRVPACLRELV-----------G--ARLVPYTGDPTDKDTIQLCENLYQYRILLGAAKN-YCTAEY 1563
95116636  1366 mEWSQELSSSKTLCLLLPKIARDL------------NvpPLVTSLNDDTGNAMLIAFAHKIYIATAML------------ 1421
109638611 1322 -KLVEPQSSPKGPRISVYLGTNPKLklqiltdlglgPscKELCVVTKSTDHPDIITAARLIYLYHIFHPGGSApQQE--- 1397
109638464 1336 -GVVEKVAEQRGICLY--------------------SrrDGMLRAVDDTGHPAVADLGRGAYLNTL--------FNENEV 1386
282174092 1605 DRMIDRLYLDEDrsvawQDGALRLGPPPKHCTKKELVAFFKIVFNALGAAG----P--------MAADRLYHCDVCRMFW 1672
131840105 1564 DRHIQKVDWTRA-----DLGLETLECPPAFATHFELKVFFRRRKSALDLFKrqssSphsaassvQSQASPAHCDFCGRYW 1638
95116636  1422 --HILHGENLEThdlgpQTGTGVVGEPPKHCTGAQLREWFIDLQKTL-----------------ALDAPSTHCAGCADFW 1482
109638611 1398 ---------VEK--------PQCLSEPPAKATATELKSWVSRHGDLIEEWSseqtE--------HSRKVRIHCSGCITYW 1452
109638464 1387 PPVMTRKRKREE--------EEPLGPPPLRATKQELCMFMRANSAKIVALE------------------KTHCASCRAYW 1440
282174092 1673 EQNMfsvqrpNISTFLSTHYIs--------------vDKRPGLFQRNKELVCLGEARTVL 1718
131840105 1639 SMALsge-naSFAKFVSDQYEpvrrlssscssgagtaSPPSVLLRRKVERVCLQEFSQVS 1697
95116636  1483 LTHG------SDPNFIEKMYR-----------------VNGGVFVRKIKKICL------- 1512
109638611 1453 TKGK------DVTKIATDDYM-----------------RDGALYVRKRKNICLNTIEDEA 1489
109638464 1441 ECV-------DIVGFVETEYA----------------VSTDGIYTHRRPSICLGGSL--- 1474
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