Conserved Protein Domain Family
PHA03078

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PHA03078: PHA03078 
transcriptional elongation factor; Provisional
Statistics
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PSSM-Id: 222971
Aligned: 25 rows
Threshold Bit Score: 228.72
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
115531738   1 MEFGLFHLAKFLLTEDEEALRQFNGVCAYLQRPKHEVLKDFYCARQSRRITRALNCADVPAEVALEFPPDLARQLVGLRL 80 
40556043    4 RELIYYNLLKYLVSGDTAYMEKFVSLCDSFGIDRVKMLSKFYNSRKTKLITNALKCNTYLDELELSYPDDIIKDLVTLKL 83 
41057102    4 RELILFHAATHVVTGDPEAPRRAASLCHGFGVDFRAIHAEF-ARRYPRTAAAV-ERAQPLPEVDAAFPPDARRQVVRLRL 81 
9633856     4 RDLILFHLSKFLLTENEDSIKMFVSLCRGFDVNAEHLILTVLNKKYLKKLTKVIRHEALLPEITVCFQDNIVYELIRLRL 83 
9634749     4 RTLISYNLLKYLDSGDEAYMEKFISLCNSFNVDRVKVLTKYYNSKNTKLISKALNCDTYLKEIELSYPDNILKELVTIKL 83 
9628990     4 RELILYHLVRYLATENDAFLVQFVSLCRSFSVDVPALLARFSTPRHARLLARALNCKQYTEELALEFPPDALRELLRLKL 83 
21492505    4 RDLILFHLSKFILTKNEDSIKTTLSLCRGFDVDLEELMISFLSKKYLKKLTNI-EYNNLLPELTISFPNDIVNELIKLRL 82 
15150491    4 RDLILFHLSKFILTKNEESIKTTLSLCRGFDVDLEELMLSFLSKKYLKKLTNI-EYNNLLPELTISFPNDIVNELIKLRL 82 
18640135    4 RDLILFHLAKILLTENKDSIKTVLSLCRGFNIDLNELIVEHFGKHHLKKFSQLLCIDSLLPELSICFPDNIIHELIHLRL 83 
148912929   4 RDLILFHLSKFILTKNEESIKTTLSLCRGFDVDLEELMLSFLSKKYLKKLTNI-EYNNLLPELTISFPNDIVNELIKLRL 82 
115531738  81 RGFRCVVRRSAWLPADAAGEALVaADGRVyHRRCNPAMLAFVRRRYRRLGREFAEa---gDALPAEPGGL---------- 147
40556043   84 NKFTKTIKRSYKLPNRGSGIAII-YDNTV-KYNVDDEILSYLKLKYLPSIYTYFKed-tlSTEDIPRDSV---------- 150
41057102   82 EAAALVVKESRALSASMRGVAVV-DGCCVrVCRANDELLEFLARRYDPAVYRYAEv----PSPSVRPGSK---------- 146
9633856    84 YKFSKQIKASYKLTESMKGIAYI-KDQKIyLSRVNDELLDFLLTEYTPHIYKYYP-----GKPDTIIGAK---------- 147
9634749    84 GKFTKTIKRSYKLPNEGIGIIVI-NGNEI-KYNADNNTIAYSKLKYIPSIYRYTEypdgiKTEDIPKESI---------- 151
9628990    84 RRCTPRVRRAARLDARARGAALV-AGREVaVRAANEELLTYLVRTYNPALYRYRR-----AGARSYTGAGagagtgdpve 157
21492505   83 YKFYKIIKPSLKLKNTMKGIVFI-KNRNVyILHTNDELIDFLFKEYDPYIYTYEI-----NKPDNLSGSK---------- 146
15150491   83 YKFYKIIKPSLKLKNTMKGIVFI-KNRNVyILHTNDELIDFLFKEYDPYIYTYEI-----DKPDNLSGSK---------- 146
18640135   84 CKFYKTVKPSYKLTTDMKGIVFV-KNRTVyVLNTNDPLIDFMFKEYNPCIYTYTI-----GKPDNLSGYK---------- 147
148912929  83 YKFYKIIKPSLKLKNTMKGIVFI-KNRNVyILHTNDELIDFLFKEYDPYIYTYEI-----DKPDNLSGSK---------- 146
115531738 148 ------------AIVCGRADVSLYEWICRdALRTNVDAEVVVTEGCIEKVLS--NTKLTSKLLaTHHRRnAVHRSLKTIY 213
40556043  151 ------------ILIFDQDSISYFTYISCkKIVSNTDIKITVTEDCINKLLDekNKDLLDSVFaNRSNN-VLSNTLNEIY 217
41057102  147 ------------VFACAGRSVTFAAAHQS-RITANRPLRVVVTEACVDGVLArgAAEVF-----DRGSG-VLPRALREIF 207
9633856   148 ------------IILCGYNKITFFTYYTT-HVVTNQYINVIVTDKCIDSLLQpqHHSLLKKIF-DGSSD-VINKVLKHIF 212
9634749   152 ------------VLIFGKDYLDYFTYMLAkKVLSNKDIKIKVTDQCIDHLLNesNTDMLDTVFsNKPNN-IISSTLNDIY 218
9628990   158 apglcapagapvLVVCGRSRIPFFAYAAA-RVVSNRDLEVVVTDACVQALLReeHAPLLEAVF-RRGADtALNRALRSVF 235
21492505  147 ------------IILCGYDKVTFYTYLIT-KIVTNQTIDIVVTDKCIELLLQpqNKQLLKDLF-NNSND-MINKILKKIF 211
15150491  147 ------------IILCGYDKVTFYTYLIT-KIVTNQTVDIVVTDKCIELLLQpqNKQLLKDLF-NNSND-MINKILKKIF 211
18640135  148 ------------IILCGYDKITFFTYLVT-NITSNKKIDVIVTEKCLISLLQpeNVHLLKQVF-NNGHD-RINKVLKHIY 212
148912929 147 ------------IILCGYDKVTFYTYLIT-KIVTNQTVDIVVTDKCIELLLQpqNKQLLKDLF-NNSND-MINKILKKIF 211
115531738 214 dryaESIAatssgieteSVP 233
40556043  218 ----SAVM---------SSL 224
41057102  208 ----YRLDedgc--ptgQTP 221
9633856   213 ----YSVFcee---gggQSP 225
9634749   219 ----LSLR---------SIL 225
9628990   236 rf-lRSASe--------RAT 246
21492505  212 ----YSVIdg-----ggQTP 222
15150491  212 ----YSVIdg-----ggQTP 222
18640135  213 ----YSILdg------gHTP 222
148912929 212 ----YSVIdg-----ggQTP 222
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