Conserved Protein Domain Family
PHA03041

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PHA03041: PHA03041 
virion core protein; Provisional
Statistics
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PSSM-Id: 222963
Aligned: 11 rows
Threshold Bit Score: 163.827
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
148912972   1 MDFMKKYTKDLETTVKNKKDEEIASTSSLIKNKsvtltDVDTMLKGKERLYQQMMMNQLEEKKTLKIKNIEIKNNsnk-- 78 
211956375   1 MDFMAKYAKELASTSRNRRDDEISTIKPNDSSAqi--sDVDTMLKSREKIYQKMIVEQLEEKKILKVTNIRIPAS----- 73 
157939718   1 MDFMSKYSKELVLTAKNIKDEEPNLNKKETSF------DLSTYLKTKETHYQKKIRDQLAEKNMLRVTELVTPIKvik-- 72 
62637481    1 MDFMAKYAKELASTSRNRRDDEISTIKPNDSSAqi--sDVDTMLKSREKLYQKMIVEQLEEKKILKVTNIRIPAS----- 73 
38229257    1 MDFMTKYSKELVSTAKNINDEEPNLNRREINS------DLNAYLKSKETQYQKIIRDQLAKKNMLRIKEAVTPVKindnf 74 
21492548    1 MDFMKKYTKDLETTVRNKKDEEIASTSNLINNKsvtltDVDTMLKSKEHLYQQMMINQLEEKKTLKIKNIEIKNNsnk-- 78 
18640178    1 MDFMKNYSKQLSTTVKNKKDEELVSTKDVVDHGam--sDVNTILKSKEHIYQQLMTSQLQEKNILKIKKEVIYATtd--- 75 
15150534    1 MDFMKKYTKDLETTVKNKKDEEIASTSNLINNTsvtltDVDTMLKSKEHLYQQMMMNQLEEKKTLKIKNIEIKNNsnk-- 78 
12085078    1 MDFMSKYSKELVLTAKNIKDEEPNLNKKETSF------DLNTYLKTKETHYQKKIRDQLAEKNMLRVTELVTPIKvik-- 72 
9633729     1 MDFMVEYEKWIDATARNTATEEDDPNPLGRRPG-----TGRTRFESSERQYQQQLIEQLRKQQMLRIE---IPQElgtps 72 
9633973     1 MDFMTEYEKWIETTAKSYKEDD-DPNPFAKRPG-----SRRAQLEDNEQQYQQQLIDQLRKQQLLKIE---IPQDpelv- 70 
148912972  79 -----lnDQCSEKKQNDPLKKIRSISHDELVKELKDIKDKTKSLQDDSDSLIKDISAAKDATFDAINSIMSDLKKRFNID 153
211956375  74 -------PQSSDVNSPNMDNSNSSISREEIIRECEDIKDKTTSLQNEADNLVQDIATTRDNTMDAINAIMKELSKKFQLG 146
157939718  73 -----nePPLVDNIANACDNNKMEEEIENIKKEYESIKDETSSLQEETKKLVDDISTARETTMEALNSIMKELTQKIQTG 147
62637481   74 -------PQSSDVNSPNMDNSNSSISREEIIRECEDIKDRTTSLQNEADNLVQDIATTRDNTMDAINAIMKELSKKFQLG 146
38229257   75 tninevaDTCAEVKTSD----------EEIKKEYEHVKNETSNLQEEAKKLVDDISSARETTMDALNSIMKELTQKIQTG 144
21492548   79 -----lnDQCSEKKQNDPLKKIKSISHDELVKELKDIKDKTKSLQDDSDSLIKDISVAKDTTFDAINSIMNDLKKRLNID 153
18640178   76 ------kQMDNECHIDPLQKKINDMSKSELIRECNNIKDTTIELKNDSESLVEDIQLAKNNTFDTINAIMNDLKRKFQLD 149
15150534   79 -----lnDQCSEKKQNDPLKKIKSISHDELVKELKDIKDKTKSLQDDSDSLIKDISVAKDTTFDAINSIMNDLKKRFNID 153
12085078   73 -----ndPPLVDNIANACANNKMEEEIENIKKEYESIKDETSSLQEETKKLVDDISTARETTMEALNSIMKELTQKIQTG 147
9633729    73 tscvrnvDASSATSTDIVPVDRRICTVPDIQKELDSVKTETCSLQRQSEDLISDISMAKDSTFGAINALMDDLRKRFQSN 152
9633973    71 ----ancPTNTDTSSSIVPMERRICTIHDVQKELDSVKTEMCSLQRQSDELISDISVAKDSTFGAINALMDDLRKRFQSN 146
148912972 154 KLDDN 158
211956375 147 NLDGE 151
157939718 148 NLIGN 152
62637481  147 NLDGE 151
38229257  145 NLIQ- 148
21492548  154 KLDDN 158
18640178  150 NLDIN 154
15150534  154 KLDDN 158
12085078  148 NLIGN 152
9633729   153 QLSEL 157
9633973   147 QLSEL 151
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