Conserved Protein Domain Family
PHA02998

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PHA02998: PHA02998 
RNA polymerase subunit; Provisional
Statistics
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PSSM-Id: 222958
Aligned: 25 rows
Threshold Bit Score: 303.971
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
211956315  19 DIENIVKKYINDSNEINDLINWANINANKFQIRNIFNTK-SNIEETKFEPKNNIGIEYSKDTKNKLSYRNKPLIEthTSV 97 
115531721   1 MDKEALRKLVGDNEKFEELYAWSRDTSDIYYLRNIVNSK-VNIEETKFSPINNVGIEYSKDAKNRLSYRNKAIIPs-RDK 78 
41057084    5 RLRDLAAKHTDA-AEAARIARWALDCAQRFALKNIVNTKtSNTDETNFEPAHNIGIEYSKDAKNRLSYKNKRSLEvdANE 83 
41057457    5 KLRELAAAHVDD-AAAAEIASWALICAHKFALKNIVNTKtSNTEDTNFDPAHNIGIEYSKDTKNRLSYKNKRSLEvvEGD 83 
40556065    2 DMIAIIKKYVDSDIEAENLLKWAVKNANIYYLRNIVNTK-VNIEETKFKTEHDIGIEYSKDNKYKLSYRNKPLIP--TNE 78 
15150474   19 DIEDIIYKYVKEKSKVKEILKWATDKASKFYIRNIINTK-SNIEETKFEPRNNIGIEYSKDSKNKLSYRNKPLIE--TNK 95 
21492488   12 DIEDIIYKYVKEKSKVKEILKWATDKASKFYIRNIINTK-SNIEETKFEPRNNIGIEYSKDSKNKLSYRNKPLID--TNK 88 
9634770     2 DMMKIIKKYINSEEEAQKLLKWAIDNANIYYLRNIVNTK-VNIEETKFKTVHNIGIEYSKDNKYKLSYRNKPSIA--TNE 78 
9633666    16 DIEEMVKRYVPD-DVVPSLLQWASDKAFKFQIKNIINTK-SNIEETKFEPKNNIGIEYSKDVKNKLSYRNKPSIV--TNT 91 
9633839    16 DIEDMVKRYVSE-DVVSSLLQWASNKAFKFQIKNIINTK-SNIEETKFEPKNNIGIEYSKDVKNKLSYRNKPSIA--TNT 91 
211956315  98 EYADICNMIRITNGTEKEVFRYLLYGIKCIKKGVSYNIDNLSDINN-DDYFNVLDKKHNISCPTCKSKNTIPMMIQTRAA 176
115531721  79 RYHALTTAIEKTNGKDRDLLRYFLYGLKCLDAGVEYDLEKLQDYDY-DKYFSVLSDKSNTPCIYCRSTNTVPVIAQTRAA 157
41057084   84 DYADLRAQIRATSGTEHDALRYLLFAVKCVAARVPYDIEEVPDHDY-SGYFNVLDEKFNLPCPSCQSKNTMPMMIQTRSA 162
41057457   84 EYADLRAQVRATNGVEQDALRYVLFAVRCVAAGVPYDIDDVRDHDY-GEYFNVLDEEHNLPCPSCRSKNTMPMMIQTRSA 162
40556065   79 KYKELCDLIRSTNGIDKETLRYLLFGIKCVHAKVEYDIEKVVDYDY-SKYFNVLSEKSNIKCVACKSTNTTPMILQTRAS 157
15150474   96 DYPDICDLIRTTNGTEKEILRYILFGIKCVQKNVEFNIDNIRDINH-EEYFNVLDKKYNLPCPECKSKNTIPVMIQTRAA 174
21492488   89 EYSDICNLIRTTNGTEKEILRYILFGIKCVQKNVEFNIDNIRDINY-EEYFNVLDKKYNLPCPECKSKNTIPVMIQTRAA 167
9634770    79 KYKELCNLIRSTNGIEKETLRYLLFGIKCVHAKVEYDIEKVPDYDY-SNYFDVLKEKSTIRCVACKSNNTIPMILQTRSS 157
9633666    92 RYEDICNMIKTTNGAEKEILRHALFAIKCIHKGVEYDIDKLPDVDYvDMYFNVLDQKHNTPCPNCKSKNTIPVMIQTRAA 171
9633839    92 QYEDICNMIKTANGTEKEILRHALFAIKCIHKGVEYDIDRLTDVDYmDTYFNVLDQKYNTPCPNCKGKNTIPIMIQTRAA 171
211956315 177 DEPPLVMHTCRDCKNHFRPPKFKDLSKKDLN 207
115531721 158 DEEATVKYVCKNCGKNFSPPKFKYRNEKQCA 188
41057084  163 DEPPLIKYACKNCQKSFNPPKFCEKKGKQKS 193
41057457  163 DEPPLIKYACKNCQKSFNPPKFCDKKPPQNP 193
40556065  158 DEEPTVRVVCKDCGKNFAPPRFKFN------ 182
15150474  175 DEPPLVMHSCRDCKKNFKPPKFRAVEK---- 201
21492488  168 DEPPLVMHSCRDCKKKFKPPKFRAVEK---- 194
9634770   158 DEEPTVRVVCKDCGKNFAPPRLKFN------ 182
9633666   172 DEPPLVRHACRDCKKHFKPPRFRDV-----V 197
9633839   172 DEPPLVRHACRDCKKHFKPPRFRDL-----A 197
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