Conserved Protein Domain Family
rnlA

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PHA02589: rnlA 
RNA ligase A; Provisional
Statistics
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PSSM-Id: 222895
Aligned: 19 rows
Threshold Bit Score: 558.518
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
38640241    4 IKELYQNLINLCV-DDNTKFYFAETVTSLGTKVRIFDYHVAGYND-WIRPDAMASRGIMFEM-NGEIPVRIMSRPMDKFF 80 
109290180   4 TIELFNNLMSVVEkSEKGNFYFKDVITSMGTKARIFSYFIASYTD-WLQDDALECRGIMFELnDKNEPVRIMARPMQKFF 82 
33620640   10 VLALFKNLMALC--DGSDTFYYKDEITAMQTRMRIFSYLYLSKPEmWNKPDALECRGIMFEIdDKGRPVRIASRPMEKFF 87 
34419319    3 TQELYNHLMTLTE-DAEGKFFFADHISPLGEKLRVFSYHIASYSD-WLLPGALEARGIMFQLdEQDKMVRIVSRPMEKFF 80 
37651685    4 ITELYDNLMNVVNsSEKGNFFFKDVTTSMGTKARIFSYFIASYSD-WLIPGALESRGIMFEItEEGKPVRIMARPMQKFF 82 
66391519    1 --------MKLC--NETECFYFIDQKTVMQTHVRIFNYRMASYSD-WLKPGALECRGIMFAM-DGDTPVKLVSRPMEKFF 68 
66392006    4 ITELYDNLMNVVNsSEKGNFFFKDVTTSMGTKARIFSYFIASYSD-WLIPGALESRGIMFEItEEGKPVRIMARPMQKFF 82 
157311524  10 VLALFKNLMALC--DGSDTFYYKDEITAMQTRMRIFSYLYLSKPEmWNKPDALECRGIMFEIdDKDRPVRIASRPMEKFF 87 
304373623   1 --------MKLC--NETECFYFIDQKTVMQTHVRIFNYRMASYSD-WLKPGALECRGIMFAM-DGDTPVKLVSRPMEKFF 68 
294661483   9 INTLYKQLMQLC--GESETFFFVDQVTVMGTPVRIFNYRMASYTD-WLKPGALECRGIMFEM-DGDTPVSIISRPMEKFF 84 
38640241   81 NysevigwekLETAGNMKMPDLN--KIAYVIDKRDGSLISTYLDISgeikNLLLKSKASIRSNQANDASVWLYQEDHKDL 158
109290180  83 N---------LKENPMTIGLDLT--KMIGLMEKADGSLISSYHDRG----YVYLKSKAAVFSDQANKAMVMLNSPAYEKL 147
33620640   88 N---------LGENDRA---RFKpeDVEMVMDKMDGSLVSTYIDNG----YVQLKSKAALYSSQAERANGLLYSEKYADL 151
34419319   81 N---------LNENPFTMDLDLT--TTVQLMDKADGSLISTYLTGE----NFALKSKTSIFSEQAVAANRYIKLPENRDL 145
37651685   83 N---------LKENPFTMNLDLT--KMVGLMEKADGSLISSYHDQG----YIFLKSKAAIHSDQANKAMALLNSPAYEKL 147
66391519   69 NyaevkaweaLKEAPVTIGD-----TVVDVMIKEDGSLISTFCDSG----YLGVKSKASVQSEQAMDAMSVIQT--NRAL 137
66392006   83 N---------LKENPFTMNLDLT--KMVGLMEKADGSLISSYHDQG----YIFLKSKAAIHSDQANKAMALLNSPAYEKL 147
157311524  88 N---------LGENDRA---RFKpeDVEMVMDKMDGSLVSTYIDNG----YVQLKSKAALYSSQAERANGLLYSEKYADL 151
304373623  69 NyaevkaweaLKEAPVTIGD-----TVVDVMIKEDGSLISTFCDSG----YLGVKSKASVQSEQAMDAMSVIQS--NRAL 137
294661483  85 NyaevkaweaLNESPIELG------EVLDVMIKEDGSLISTFLDGG----FLAVKSKGSVKSEQAMDAQSVLMA--NREL 152
38640241  159 LEFCTAYAENGFTVNMEWTAPHNQIVLCYNEHQLRILNIRHNETGEYVDFGELQKDPTFV--KYAADFFe----vPGDGK 232
109290180 148 RDAIVQ-AGSDFTFNMEYIGPSNRIVLPYEEEELIVLNVRHNETGQYVEFSTLLDDPLIR--HRMIGVYpcpdwsKVTPD 224
33620640  152 RAKIAD-IGSDYTFNFEYTAPSNRIVVEYSEPSLTLLNVRHNVTGEYVPHQMLFADAILR--PHLVNALqv---dSARFS 225
34419319  146 WEFCDDLTQAGCTVNMEWCAPNNRIVLEYPEAKLVILNIRDNETGDYVSFDDIPLPALMRvkKWLVDEYdp---eTAHVD 222
37651685  148 RERIAD-SGPGYTFNMEYVGPSNRIVLPYEDEELIVLNVRHNETGEYVNISTLMNDPATR--SRMVGVYpspdweKITPA 224
66391519  138 FERLTELVRDGFTVNMEYVAPTNRIVIGYQDPAVVILNIRNNDTGEYVPYQDIFADAVLR--PYLVEREki---eITDLD 212
66392006  148 RERIAD-SGPGYTFNMEYVGPSNRIVLPYEDEELIVLNVRHNETGEYVNISTLMNDPATR--SRMVGVYpspdweKITPA 224
157311524 152 RAKIAD-IGSDYTFNFEYTAPSNRIVVEYSEPSLTLLNVRHNVTGEYVPHQMLFADSILR--PHLVNALqv---dSARFS 225
304373623 138 FDRLTELVVDGFTVNMEYVAPTNRIVIGYQDPAVVILNIRNNDTGEYVDYQDIFADSVLR--PFLVEREki---eVTDLD 212
294661483 153 LTRLTEIAKENYTVNMEYVSPKNRIVVGYDSPDLRILNVRHNITGEYIPYDELFADALLR--AYLVKREni---eVLDLD 227
38640241  233 AWIDEVYQMTGIEGFVVVMEDYQMFKLKTDWYVALHHTKDSINNSERLIYACAENCTDDLRQMFRDDENSLQKIEIFDNH 312
109290180 225 EWEAATRAETDIEGVIGIMPDGQLFKLKTDWYSSLHRTKDSINNNKALFQSIKERASDDLRGMFSDDNAALAKIEAFESA 304
33620640  226 NILDEVRIAEGIEGIVARTKDGQMFKVKSEWYIGVHNIKNTSMFPNNLIYYVVESETDDLRAAYEGEPEALERIELFEEA 305
34419319  223 DFVEKLRATKGIEGMILRLANGQSVKIKTQWYVDLHSQKDSVNVPKKLVTTILNNNHDDLYALFADDKPTIDRIREFDSH 302
37651685  225 EWEAGVRAETDIEGVIGIMDDGQLFKLKTDWYSALHRTKDSINNNKALIQSIKERATDDLRGLFADDAVSIAKIEDFEEL 304
66391519  213 AFIADAYTKEGFEGYVIKTNKG-FVKAKTNWYVNLHRTKDSITNNKDLFLNIVDNTVDDLKQLFLDDTYSLKKIDAFETM 291
66392006  225 EWEAGVRAETDIEGVIGIMDDGQLFKLKTDWYSALHRTKDSINNNKALIQSIKERATDDLRGLFADDVVSIAKIEDFEEL 304
157311524 226 NILDEVRTAEGIEGIVARTKDGQMFKVKSEWYIGVHNIKNTSMFPNNLIYYVVESETDDLRAAYEGEPEALERIELFEEA 305
304373623 213 AFITEAYTKEGFEGYVIKTDKG-FVKAKTNWYVNLHRTKDSINNNKDLFLNIVENTVDDLKQMFLDDMYALKKIDAFETL 291
294661483 228 AFAKEAYQNEGFEGYVVLTTKG-FVKIKTNWYVNLHRTKDSITNNKDLFLNIVENTVDDLKQLFSSDLVSLKKIDDFEKL 306
38640241  313 FRDVVMDAMKKLTEAYEKYRGMERRDYAINMNNDFK----NERHWFNIAMQMFAQRPDFS-MTDEIVAVIKKYPKTFIPK 387
109290180 305 YIDTVAKYHKICSDVFYDLRGFDRRSFAIEAQARMK----DCRYLFSIVMQQYGRDWDGElAVEKIEEHIIKEYAKYVPM 380
33620640  306 FRSILRNAFTTATEFYNAHAGEDRKTYASNATIESRkhgdAHAYIFMCLMIAFDG-LDYDrIMDSMKTYYLRNYKKLIPA 384
34419319  303 VSKTVSASFHAVSQFYVKNRHMSRKDYAIAGQKALK------PWEFGVAMIAYQK-KTVEgVYEALVGAYLKRPELLIPE 375
37651685  305 YISTISRYHELCFSVYQSLQGKDRRSFAIEAQAKLS----DHRYLFSIVMRQYARDWDSEeVIGAIEEHMVKNYDKYTPA 380
66391519  292 FLDSLNRLSAKAFKAIEDTKGLSRKDYAIKLSSDLTp---DGRIIFGPMMRYFDD-TDKQkLVDNIVSLMVKNYEQFIPE 367
66392006  305 YISTISRYHELCFSVYQSLRGKDRRSFAIEAQAKLS----DHRYLFSIVMRQYARDWDSEeVIGAIEEHMVKNYDKYTPA 380
157311524 306 FRSILRNAFTTATEFYNAHAGEDRKTYASNATIESRkhgdAQAYIFMCLMIAFDG-LDYDrILDSMKTYYLRNYKKLIPA 384
304373623 292 FLDSLNRLTAKAFQSIEDTKGKSRKDYAIALSSDLTp---DGRIIFGPMMRYFDD-TDKQkLVDNIVALMAKNYEQFIPE 367
294661483 307 FLDSLNRLSAKAFKAIEDNKGKSRKDFAISLSADLSn---DGRIIFGPLMKYFEE-TDPQkLVDRIIEMMVKNYDQFIPE 382
38640241  388 GY 389
109290180 381 AY 382
33620640  385 DK 386
34419319  376 KY 377
37651685  381 KY 382
66391519  368 EY 369
66392006  381 KY 382
157311524 385 DK 386
304373623 368 EY 369
294661483 383 QY 384
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