Conserved Protein Domain Family
O

?
PHA02529: O 
capsid-scaffolding protein; Provisional
Statistics
?
PSSM-Id: 222855
Aligned: 16 rows
Threshold Bit Score: 338.259
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
165970257   1 MPKTSDWVIVATAGTTVsDGRVISESWINDMAELYDPE-EYKALIWPEHYRSAWA---VFEGKNWGEVEELKAGKFK--- 73 
148727152  32 STLRTGWVCIATEGTTV-DGREITAAWLTDMAETYDPE-YYTALIWPEHDRWA----------NFGYVQELKTDVVD--- 96 
134288713   1 MASKTKFFRVAVEGATV-DGREIKREWLTQMAKHYDPK-LYGARVNVEHIKGWAPlsaNNPFGAYGDVIALKAAEIEdgp 78 
134288755   1 MASKTKFFRVAVEGATV-DGREIKREWLTQMAKHYDPK-LYGARVNVEHIKGWAPlsaNNPFGAYGDVIALKAAEIEdgp 78 
109289939   1 MTTKSKWFVVATEGATT-DGREISREWLTQIEENYDPKnNYGARINLEHFRWRWFekdDPHSYSYGDVLAVKTEEREd-- 77 
109302916   5 TELITDFVCVATSGNTI-DGRHIDAQDLERYGGNLRPRkIYGGNL--------VG---ALALANFGRVVEVKAEDGEe-- 70 
72537720   14 MASKTKFFRVAVEGATV-DGREIKREWLTQMAKHYDPK-LYGARVNVEHIKGWAPlsaNNPFGAYGDVIALKAAEIEdgp 91 
9628621     4 SKLKTDFICIATSGYTV-DGRQITAQELHEMAETYDPE-HYTANLWPEHRRWF----------NMGQVIELKAEENEk-- 69 
17975127    1 MPKTSDWVIVATAGTTVsDGRVISESWINDMAELYDPE-EYKALIWPEHYRSAWA---VFEGKNWGEVEELKAGKFK--- 73 
17313221    2 KKFRSKWFRIAVEGATT-DGRNIERDWIEQMAAQYDPN-TYGARINCEHIKWAWP---AGEFGAYGDVLACKAEEIDin- 75 
165970257  74 --DKLRLFAKLTPNHYLLEANKDGQKLFSSIEPEPDYKKEGRCYLLGLAVTDSPASSGTTRLRFSRV------------Q 139
148727152  97 --GKLKLFAILSPTRDLVYYNQVGQYQFCSIEPQEQFADLGRTYLRGLGVTDQPASTGTTHLKFKKKgesrligtseplD 174
134288713  79 lkGKMALYAQIDPTDELVALSKKRQKLFTSIEINPDFADIGEAYLVGLAATDDPASLGTEALQFAAKr-----------S 147
134288755  79 lkGKMALYAQIDPTDELVALSKKRQKLFTSIEINPDFADIGEAYLVGLAATDDPASLGTEALQFAAKr-----------S 147
109289939  78 --GKLQLLAEIAPTEALVKLVKDKQKVYTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGathnpladrkqkP 155
109302916  71 --GKTRLYARIAPSLEMIELNKEGQGLFTSIEITPNFANTGKAYLSGLAFTDQPASLGTTQLNFSKRikdenvkvgnceQ 148
72537720   92 lkGKMALYAQIDPTDELVALSKKRQKLFTSIEINPDFADIGEAYLVGLAATDDPASLGTEALQFAAKr-----------S 160
9628621    70 --GETQLFAIIAPNKELIEYNRAGQYLFTSIEITPNFRNSGKAYLSGLGVTDSPASVGTTELKFFNAeqkg------svc 141
17975127   74 --DKLRLFAKLTPNHYLLEANKDGQKLFSSIEPEPDYKKEGRCYLLGLAVTDSPASSGTTRLRFSRV------------Q 139
17313221   76 gqKKLALFAQLEPNQALLELNKQRQKVYTSVEIDPKFADTGKAYLVGLAITDSPASLGTEALSFSAKngtla--srktnP 153
165970257 140 GQYTELECSALEEWDltpfysQNAEFSKFFAMCRSFFNreqpn-------etnqpQSEDEEpmkQEQFDQMMGAINGIAT 212
148727152 175 LSMFKLPKHEKADGL-----------------IAKFFSfmashge---taiqptpSQPEDEemtKEQFDQMLGALNGLGT 234
134288713 148 NNLYTPACETAIEFE------GAAETAGLKEWVKGLFA-----------------RNREND---DERFADVREALERVAI 201
134288755 148 NNLYTPACETAIEFE------GAAETAGLKEWVKGLFA-----------------RNREND---DERFADVREAVERVAI 201
109289939 156 ENLVSEAVEANLEFT------AEPEKGAWLEKFKAMFT-----------------KAKTDN---DGKFAEHEKAMELLAE 209
109302916 149 LDFSKVTFSEDETRE--------NLLNKFFNLGKKLFSteevataenpainpennNKKEEKemtEEQFNKLIGAVQGLGE 220
72537720  161 NNLYTPACETAIEFE------GAAETAGLKEWVKGLFA-----------------RNREND---DERFADVREAVERVAI 214
9628621   142 gEFIKVDFSAKEDVE------EEKALRTLANVFKKLFSilrpngkn--epnpnnnNHKEDHamnDKQFAQLIEAVKGLDA 213
17975127  140 GQYTELECSALEEWDltpfysQNAEFSKFFAMCRSFFNreqpn-------etnqpQSEDEEpmkQEQFDQMMGAINGIAT 212
17313221  154 DTLFSAAEEGTLEFEey--edKPSVGAALFTKVKELLK--------------------GKEartQAEFGQVGEAVEAIAE 211
165970257 213 KqneleskfntFSAQKPETKGEEPEGDGKDKETNGMTPEQFSKLTETLDSIAQKQADletkftqlsqtgpDGQGADKSGG 292
148727152 235 Kid------gfSTKLEAKPETTAPVTEPAKEEKAGISAEQFSKLEETLNGLASTVGElkgqvdkfsaevpG-QRPGAIGG 307
134288713 202 Hah-------hTGREVATLSTAVTSATGAAADAKKRADEAFAAVEALTEKLSNTDNG-------------APQRPPSTGS 261
134288755 202 Hah-------hTGREVATLSTAVTSATGAAADAKKRADEAFAAIEALTEKLSNTDNG-------------APQRPPSTGS 261
109289939 210 Q-------------------------FSKVSTENDRLQTELSTLQIEFTELQKQAGEfaekfakleqepsANYTPRPKAT 264
109302916 221 Kid-------qHFNAQQPPKPAEEPKAEEKTAENGVTAEQFNALIKQVEDLGNKFNQal----------nQEVTQVPNGA 283
72537720  215 Hah-------hTGREVATLNTAVTSATGAAADAKKRADEAFAAVEALTEKLSNTDNG-------------APQRPPSTGS 274
9628621   214 Kid------nhFSAKVETKEPENKPEEKKDEQPQSVTAEQFNQLLITVQALDKKFNElsqeqttvpsgvpTVEKENVYSL 287
17975127  213 KqneleskfntFSAQKPETKGEEPEGDGKDKETNGMTPEQFSKLTETLDSIAQKQADletkftqlsqtgpDGQGADKSGG 292
17313221  212 H-----------SRDLGEQLGEQKKQTQQLASQLDKVTKELADLKSTLDSTRDHSQQ---------------QRPPVTGG 265
165970257 293 GEGyMPV 299
148727152 308 DDTtYQV 314
134288713 262 TGE---L 265
134288755 262 TGE---L 265
109289939 265 GAKaGDV 271
109302916 284 PAAeQKF 290
72537720  275 TGE---L 278
9628621   288 NGYnIDL 294
17975127  293 GEGyMPV 299
17313221  266 GSV---A 269
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap