Conserved Protein Domain Family
int

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PHA00730: int 
integrase
Statistics
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PSSM-Id: 222813
Aligned: 9 rows
Threshold Bit Score: 467.747
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
42495064    1 MPSFYVGSNFYIKEIKGKYYVYSIEKGEDNKQRHHYIAPLDKVIEFYISNgglrgypPNGGVGVPPTMgacRAPDPGSNP 80 
38639805    1 MPNFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLEQIVNEYYDM-------KCGRRDLNPGSpawEAGIRGTPP 73 
42494935   34 GNKVFTFGDIRIREVKGKYYVYLIEKDNEGNRRDHYVGSLDQIVKDYISI-------KVRGTGFEPAQ----AFASGASV 102
9625521     4 DKTRYKYGDYILRERKGRYYVYKLEYEN-GEVKERYVGPLADVVESYLKMklg-vvgDTPLQADPPGF---EPGTSGSGG 78 
160688429   1 MPNFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLEQIVNEYYDM-------KCRGRDLNPGHgleRPALGGTPP 73 
198449240   2 GNKVFTFGDIRIREVKGKYYVYLIEKDNEGNRRDNYIGKLDEVVKFYTKNaktgvvgALPPQGSGPWD-------QGSNP 74 
270281826   1 MPNFYVGSKFYVKEIKGKYYVYSIENGDDGKQRHTYIGSLEQIITSYLELgvwgvppQCGRRDLNPGSpawEAGIRGAPP 80 
270281793  21 GNKVFTFGDIRIREVKGKYYVYLIEKDNEGNRRDNYVGKLDEVVRFYIKNaktgvvgAFPPQGSGPWD-------QGSNP 93 
270281754  13 DKTRYKYGDIILRERKGRYYIYKLETIN-GETKETYVGPLIDVVESYLKMkeigvlgVSPNVAGPPGF---EPGTYGLKA 88 
42495064   81 GRGAFlyvdSNNELKGVRIIDSNLTSSNNSEISASDLLKFELTLR-QKNISEETIKKYISCVKQGRKESNN-CIKAWRNF 158
38639805   74 KTPDA----NDDELKGVRIIDSNLTSSNNSEISASDLLKFEFTLR-QKKITDKTIKEYINCVKQGRKESNN-CIKAWRNF 147
42494935  103 RPMGDtpipPDLKNKGVITKDMEITRDKLNE-------FFEWCVK-KRKNSIDTCKDYILYLKRPLNKNKKwSVFAYRLY 174
9625521    79 GKEGTer----rKIALVANLRQYATDGNIKA-------FYDYLMN-ERGISEKTAKDYINAISKPYKETRD-AQKAYRLF 145
160688429  74 KTPTA----NYEELKGVRIIDSNLTSSNNSEISASDLLKFELALR-SKNISEETIKKYISCIKQGRKESNN-CIKAWRNF 147
198449240  75 CPATSlsplSNNELNVVITNEPEITGDKKTEKLPSKMELFAFYNDcVKKVSRETCKEYVNYLRKPLDVNNKaSILAWKKY 154
270281826  81 KTPTD----NNVELKGVRIIDSNLTSSNNSEISVSDLIKFEFALR-QKKITDKTIKEYLSCIKRNKKDSNN-CIKAWRNF 154
270281793  94 CPATFlsplSNNELNVVITNEASFTGDKKTEKLPSEMELFAFYNDcVKKVSRETCKEYVNYLRKPLDVNNKaSILAWKKY 173
270281754  89 RRELDelrdRAEELKEVAILRKYVTEGNLEE-------FYSWATM-KKGIDERTAKLYVRQIQKPFEKKRN-RIFAYRAF 159
42495064  159 YRLVLNRD---------PPSELKPKK--TKPDLKVPTLEEVRETLDKVKQY-PSLYLLYRLLLESGSRLREALKLLNNYN 226
38639805  148 YKLVLNRD---------PPESLKIKR--TKPDLRVPTLEEVRKTLSTVKEY-PNLYLFYRLLLESGSRESEALKVLNDYN 215
42494935  175 YEFLGKED---------KAKELKVEKkmSIPVYRIPSLEEIKKVLNHED---ERIRILYRLLLESGIRLKEALFILNNYD 242
9625521   146 ARFLASRNiihdefadkILKAVKVKK--ANADIYIPTLEEIKRTLQLAKDYsENVYFIYRIALESGVRLSEILKVLKE-- 221
160688429 148 YRLVLNRD---------PPESLKIKK--TKPDLRVPTLEEVKRTLEVVKSN-YSLYLLYRLLLESGSRESEALKVLNDYN 215
198449240 155 YKWKGDIE---------KWKAIKTKK--SGVDLKVPSVDQIKQWAEKVKG--SRVELLFKLLLESGIRFTEAIKVLNEYS 221
270281826 155 YRLVLNRD---------PPESLKIKR--TKPDLRVPTLEEVRKTLSTVKEY-PNLYLFYRLLLESGSRESEALKVLSEYN 222
270281793 174 YKWKGDLE---------AWKKIKTKK--SGVDLRVPSEAEIKEWLTKVKG--TKVELLFKLLLESGIRLTEAVKLVNEYD 240
270281754 160 ARFLIEKGigv----sdILEKLKTIS--SKPDLRVPTLDEVRKTLQLAKEYsENVYFVYRLALESGSRLSEILKVLKE-- 231
42495064  227 PQNEIRGDGFSIYVLNWTRGQKKSFYLFHITELKAEKVTEGQITSAVRRLNL-VPPKYIRKFVATKLFELGVSSEVVDFL 305
38639805  216 PQNEIREEGFSIYILNWTRGQKKSFYIFHVTELKQIKISKAYVDKYVRRLNL-VPPKYIRKFFATKALELGIPSEVVDFL 294
42494935  243 PALDQMEDGFYVYTVNLIRKSKKSFYAFHITPLQKTYITESIID----HTDLpVKPKFIRKFVATKMLELGIPSEVVDFF 318
9625521   222 PERDICGNDVCYYPLSWTRGYKGVFYVFHITPLKRVEVTKWAIADFERRHKDaIAIKYFRKFVASKMAELSVPLDIIDFI 301
160688429 216 PQNEMQEVGFSIYILNWTRGQKKSFYLFHVTELKQIKISKAYIDKYVKKLSL-VPPKYIRKFVATQMLSLSIPSEVVNFI 294
198449240 222 AENDVCENNICIYTLNWQRGSKRVFYVFHISKLEKQNITYNYAKKLFHELD--IAPKYIRKFTATKMLELGIPSEVVDFL 299
270281826 223 SQNEMQEVGFSIYILNWTRGQKKSFYLFHVTELKQIKISKAYVDKYVKKLNL-TPPKYIRKFTATKMLELGIPSEVVDFI 301
270281793 241 PKNETIESSYYIYTMNWSRGSKRVFYVFHVTPLQKLQITYNYAKKLFHELK--IDPKYVRKFVATKCLELNIPAEVVDFL 318
270281754 232 PEKDVCDNDICYYPLAWTRGQKSVFYVFHLTPLRKIDITQWAISDFERRNDEaIPIKYIRKFVATELAGLGINFDIIDFI 311
42495064  306 EGRTPGNILTKHYLDLLTLAKKEYKKYAEWLKQI 339
38639805  295 EGRTPGDILTKHYLDLLTLAKKYYPLYAEWLYTF 328
42494935  319 QGRTPSSILSKHYLDLLTLAKKEYKKYAEWLTKY 352
9625521   302 QGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLKGV 335
160688429 295 QGRTPSEVLTKHYLDLLTLAKKEYKKYAEWLRQT 328
198449240 300 EGRTPGNILTKHYLDLLTLAKKYYPLYAEWLRQN 333
270281826 302 QGRTPSEVLTKHYLDLLTLAKKEYKKYAEWLRQN 335
270281793 319 EGRTPTQILTRHYLDLLTLTKKYYPLYAEWLRQT 352
270281754 312 QGRKPSRVLTQHYVSMFAIAKENYKKYAEWIRQT 345
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