Conserved Protein Domain Family
pol

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PHA00497: pol 
RNA-dependent RNA polymerase
Statistics
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PSSM-Id: 222802
Aligned: 5 rows
Threshold Bit Score: 918.843
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
22855206    9 EQDAHHSEHVDLDVELGHTVSARSTGKPRAPWKRKLGYEGGAPVFDGSDAHVDALFRANNNNSAAKRNREAPFREgpieT 88 
22855213    8 PKHAETRIVTDAPRNSESVGDHLFNGGVNHHDEDPDAYTKMYGPLVGYDPRNPTTLFANARQTGTQLVAPRKARE----I 83 
20330566    1 -------------------------------------MPRRAPAFPLSDIKAQMLF---ANNIKAQQASKRSFKEgaieT 40 
17736955    1 -----------MASFVPLVGDPKLEGSYFSWVNNQPSAMDDYSLV-----KTVAAIRTAFGPSINRAPSFKDVTQlvvvT 64 
269838912   1 MKDDTLPLVTGGDRGFESVAKSLFDGVHNPHIANPTLFNDTYPKTITFDPKNPGSVFGAGNTNRNKPVAQRNARE----V 76 
22855206   89 MRDRMSW---DESNLRVMDRLSTKLTDRFPASTDKLGrVGPNAIRANFLGLRHVPGLPMIPATFPLTDNTKKRNDAGLAd 165
22855213   84 LTGIYSF---EPTVLAFQREFVKRANAVAQPDLNSDG-FSLNGLHTTFDSIRSVSGYPQWPVSALPKSNVGLLRDLKLQ- 158
20330566   41 YEGLLSV---DPRFLSFKNELSRYLTDHFPANVDEYGrVYGNGVRTNFFGMRHMNGFPMIPATWPLASNLKKRADADLAd 117
17736955   65 RTGVKHYkanDPQYLRFQKELADALQQFEPSKQLTLG-VTGLGLTRDFGTMYTHGAVFMNPTLSPRVDRLGETG------ 137
269838912  77 LPGIYSF---DPDMIKFQRRFATSVDADLKPEIDENL-FSLNGMHTNMATVMTVSGFPQLPVSALPRDNAKFVKQLGLA- 151
22855206  166 GPINKQHELIFRATIRLFFSSLENQGLKIARGSSTGCPDFQKTMSAKVMTATRALANAEAAGKL--YLKGAYREAFLLYD 243
22855213  159 ERMTARQVVIAREIWKRVWGHMKPTAIKIPKMSTSGPPRNVNDAEMKLQYALALFSGNRYNGYLdaFKSGDLSRFYRDYE 238
20330566  118 GPVSERDNLLFRAAVRLMFSDLEPVPLKIRKGSSTCIPYFSNDMGTKIEIAERALEKAEEAGNL--MLQGKFDDAYQLHQ 195
17736955  138 GELPSDYMLALSIMSEIYFEEFKPAKVRTNGKSKTGLPNNTKDAREKKKFFMSLMDHG--TGWSsaLAKGDYSYSAKYYG 215
269838912 152 GKMTTRQRAVATAVWDLVWGSYKPSAINIPKLSATGPVRMTNDPEYKLQFALAMQTHGRMERMLqtFMSGDLGALHRDFE 231
22855206  244 FGGCYYVVYREQMSDAVTVD-EAGDFVAKVRQVATEEYAVSgghkgkmieaskdpsrLRDA-GYYVPEGFFATRRRTAMA 321
22855213  239 AAVIMGTNVRWQVDNPGKKR-DYWAQADIERELAPSKRPIT----------------TKVEiNGTVYDDFAAMRTRLVNA 301
20330566  196 MGGAYYVVYRAQSTDAITLDpKTGKFVSKDRMVADFEYAVTggeqgslfaaskdasrLKEQyGIDVPDGFFCERRRTAMG 275
17736955  216 SAPITLPTYRDQLEKPGKKR-DGYDFLGNAVVAADKSIPSK---------------------YSQGVDGLHALRRRTAYA 273
269838912 232 IAPIMGVNVRWQVDKPGKVR-KSWSLQDCLRDPSPDQHVIT----------------TKVGdFLPHAADFAAMRCRLINA 294
22855206  322 CPFTSNAPIMVIAQSVRARVYHEYAYTLHHTTrsQKQEKVSDWNFAIATDVSDHDTFWPGWLLDLICDELAEMgFADWWI 401
22855213  302 GPWTINVALQPFATGCMNAMFELYRATWHPDE--DKIAGFLEGKHAFFGDVSSYDHSFSEEKIDLSLEVGKEF-ISPEIM 378
20330566  276 GPFALNAPIMAVAQPVRNKIYSKYAYTFHHTTrlNKEEKVKEWSLCVATDVSDHDTFWPGWLRDLICDELLNMgYAPWWV 355
17736955  274 VSYAAATPMQCFVAGCRHIALERYGETWHEHDaeDIIRRIYKYGFYELYDASAFDTGFSWKEITTMIDAIPGI--TDLAR 351
269838912 295 GPWTINCVLQMVATGTMYAMFEQYASTWHKDE--DTLDQFCSGKDIWCGDVSNYDHSFTEEMIDLSLDRGREF-WDPRLM 371
22855206  402 EILRTTMRLPVYVSAPGPDIG-HVLFGDWE---NPQMNVGLPSGIGITDLMGSLlMVPCYTIMQLDHTAPHLWASVrdlp 477
22855213  379 ELASSLFYAAYFTRPLGPDDG-PQLVGNPNrylEKQVKAGNRSGHAFTSLFAKV-WKVIDTVSKFDQMGYDVVANM---- 452
20330566  356 KLFETSLKLPVYVGAPAPEQG-HTLLGDPS---NPDLEVGLSSGQGATDLMGTLlMSITYLVMQLDHTAPHLNSRIkdmp 431
17736955  352 DYMRSVHRLPLLITSDVRGVK-GAYLLNMDk-ySPGLQSGVPSVSDFGKIRGAAqWS--YGLMVLGAIRYQSRAQLkte- 426
269838912 372 QVAESLYYAAYFARPLGPDDKiGAMVGDPRdylNKQVIAGNRSGHAFTSLMAKV-WKVIDTLCVFDAMGYDAIKDL---- 446
22855206  478 sactwmDSYLRGNEEILQMSKSDDALLGWKRGPSSAAARKLLDKMQEGDKtlspYMIISYEHGGAFLGDILtydHTGDLA 557
22855213  453 ------DAILKGDMPFGCINNGDDEIVWFKSERDYRLFLRLLETQPQEQR----MFKVGPEEGAVFSGSVY---QLIGPL 519
20330566  432 sacrflDSYWQGHEEIRQISKSDDAILGWTKGRALVGGHRLFEMLKEGKVnpspYMKISYEHGGAFLGDILlydSRREPG 511
17736955  427 ----fkTLLKHGRPDFAMQNRGDDTMPLAARQKDLQKWCEIVEGFK--------FCKWEKDTGKKFIGRVLy--QRTPES 492
269838912 447 ------KPLLKGEMPLGMLNNGDDETVWFDRPADYAFFMKIRDNQPENER----MFKVEREVGQVYSGKVF---QKVGDR 513
22855206  558 DARFTGNVISYVVNMFCPEYSVDSKQpsrekraRPFAGLAVEAAPTVFGSAPHFDDINDVIEEVHHDMLGYSYRAFrQDI 637
22855213  520 KYQAVERITTPFQRIICPERSIGGNF-------RKFWPLGILERYNKRNSHPVLEEVWRVFDDTYATLMEPHYGSF-LGI 591
20330566  512 SAIFVGNINSMLNNQFSPEYGVQSGVrdrskrkRPFPGLAWASMKDTYGACPIYSDVLEAIERCWWNAFGESYRAYrEDM 591
17736955  493 KVVAYSDIVTMLEKTFINERSMFSAH-------RPFAATGNVMRYEMNMAHPAFGAVMDVVDTIMLKHFGVTYKECfVG- 564
269838912 514 QYKSVERLNTTFERTLCPERSIGGFF-------RPYWPIGLLERFNRRNSHPVLEQMWDKFDEAWAIEMAPTHGSY-LGI 585
22855206  638 LAEDKAALAdwirrrssfESLGALSPIDHEVLADPSKMWWKFDILEINPAVVELVS-SGLERSLTESFFNSVTRDVR 713
22855213  592 VQRAHKEIP---------FSVDDLSWKEIMVLDDPNKMYHRFTDEEIRDQVQESAF-RKLQPIFFERMFKEHYKGNY 658
20330566  592 LKRDTLELSryvasmarqAGLAELTPIDLEVLADPNKLQYKWTEADVSANIHEVLM-HGVSVEKTERFLRSVMPR-- 665
17736955  565 ----AQALEkelnngvelPDYAGLNQATRDFILDPDVIHYKWRESDIDPRVLDMVMpTSLEPDLCEEAVHKF--GFV 635
269838912 586 IDRAAKSMP---------FNVNGLNWKDIAVLEDPSKLHHRWTPDEIDANVVKSSI-SRLHHSHFAGFYGTYYQGNL 652
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