Conserved Protein Domain Family
PHA00363

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PHA00363: PHA00363 
major capsid protein
Statistics
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PSSM-Id: 222784
Aligned: 8 rows
Threshold Bit Score: 876.49
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
9629155    1 MAKGRKLPSVMKNRFSEVPTATIRRSSFDRSHGYKTTFDMDYLVPFFVDEVLPGDTFSLSETHLCRLTTLVQPIMDNIQL 80 
19387569   1 MKKKMSKLNARVHDFSMFKGNHIPRSKIHIPHKTIRAFNVGEIIPIYQTPVYPGEHIKMDLTSLYRPSTFIVPPMDDLIV 80 
12085136   1 ---MKLGSRHNQHSFAQIPSVHTTRSKFNRSFGTKDTFKFDDLTPIFIDEILPGDTINMNTKTFIRLATQVVPVMDRMML 77 
9791178    1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRL 80 
47566141   1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFNAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRL 80 
9634949    1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRL 80 
17402851   1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRL 80 
77020115   1 MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRL 80 
9629155   81 TTQFFFVPNRLLWDNWESFITGGDEPvawtstNPANEYFVPQVTSP-DGGYAENSIYDYFGLPTKVANYRHQVLPLRAYN 159
19387569  81 DTYAFAVPWRIVWKDLEKFFGENSDSw-----DVKNAPPVPDIVAP-SGGWDYGTLADHFGITPKVPGIRVKSLRFRAYA 154
12085136  78 DFYFFFVPCRLVWDNWEKFNGAQDNP------SDSTDYLIPTITAP-AGGFENMSIYDHFGIPTQVANLEINALPFRAYN 150
9791178   81 DTQYFFVPLRLIWSNFQKFCGEQDNP------GDSTDFLTPVLTAP-SGGFTEGSIHDYLGLPTKVAGIECVAFWHRAYN 153
47566141  81 DTQYFFVPLRLIWSNFQKFCGEQDNP------DDSTDFLTPVLTAP-TGGFTEGSIHDYLGLPTKVAGVQCAAFWHRAYN 153
9634949   81 DTQYFFVPLRLLWSNFQKFCGEQDNP------DDSTDFLTPILTAP-AGGFTEGSIHDYLGLPTKVAGVQCVAFWHRAYN 153
17402851  81 DTQYFFVPLRLLWSNFQKFCGEQDNP------GDSTDFLTPVLTAP-SGGFIEGSIHDYLGLPTKVAGIECVAFWHRAYN 153
77020115  81 DTQYFFVPLRLLWSNFQKFCGEQDDP------GDSTDFLTPILTAPqNGGFAEGSIHDYLGLPTKVAGVQCVAFWHRAYN 154
9629155  160 LIFNEYYRDENLQESLPVWTGDadpkvdpTTGEESQEddavpyvYKLMRRNKRYDYFTSALPGLQKGPSVGIGItggdSG 239
19387569 155 KIINDWFRDQNLSSECALTLDSsn----sQGSNGSNQvtdiqlgGKPYIANKYHDYFTSCLPAPQKGAPTTLNV----GG 226
12085136 151 LIYNDWFRDQNLIGKIAVPKGD--------GPDNHAD-------YQLLKAAKPHDYFTSALPWPQKGMAVEMPI----GN 211
9791178  154 LIWNQYYRDENIQESVDVEMGD-------TTSNEVNN-------YKLLKRGKRYDYFTSCLPWPQKGPAVTIGV----GG 215
47566141 154 LIWNQYYRDENIQESVEVQMGD-------TTTDEVKN-------YELLKRGKRYDYFTSCLPWPQKGPAVTIGV----GG 215
9634949  154 LIWNQYYRDENIQESVEVQMGD-------TTTDEVNN-------YTLLKRGKRYDYFTSCLPWPQKGPAVTIGV----GG 215
17402851 154 LIWNQYYRDENIQESVDVEMGD-------TTSNEVNN-------YKLLKRGKRYDYFTSCLPWPQKGPAVTIGV----GG 215
77020115 155 LIWNQYYRDENIQDSVEVQMGD-------TTADEVNN-------YKLLKRGKRYDYFTSCLPWPQKGPAVTIGV----GG 216
9629155  240 RLPVHGLairsYLDDSSDDQFSFGVSYVnasqkwftadgrltsGMGSVPVGTTGNFPIDNVVY---PsyfgTTVAQTGSP 316
19387569 227 MAPVTTK----FRDVPNLSGTPLIFRDN---------------KGRTIKTGQLGIGPVDAGFLvaqN----TAQAANGER 283
12085136 212 SAPIT------YVPNAGNGPYPHFNWVQt--------------PGGPGNNGALSQVTFGGQKAisaAgndpIGYDPQG-- 269
9791178  216 IVPVQGLgi-qWGNSSAPNPITASSWINsvnp-------tfinSTTPTPTGTNQILNYGQAYYikkP----------GEA 277
47566141 216 KAPIEGL----YMNVNSNNPVGKFVLDSqstprvlqdlqgnklSGIAAYNQTGKHVYVNSAWYtvtPqsepGATLENGNY 291
9634949  216 KAPIEGL----YMNVNSSNPVGKFVLDSqstprvlqdlqgnklSGIAAYNQTGKHVYVNSAWYtvtPqsepAATLENGNY 291
17402851 216 IVPVQGLgi-qWGNSSAPNPITASSWINsvnp-------tfinSTTPTPTGTNKILNYGQAYYikkP----------GEA 277
77020115 217 IVPVQGLgi-qWGGSTGPNPITASDWRDsvnp-------tyvnSATQTPTGTNKILSYGQAYYikkP----------GEP 278
9629155  317 SSSStppfvkgdfPVYVDLAASSSVTINSLRNAITLQQWFEKSARYGSRYVESVQGHFGVHLGDYRAQRPIYLGGSKSYV 396
19387569 284 AIPS---------NLWADLSNATGISISDLRLAITYQHYKEMDARGGTRYVEFTLNHFGVHTADARLQRSEFLGGHSQSL 354
12085136 270 -------------TLIADLSSATAATINQLRQAMMMQSLLELDARGGTRYVEILKSHFNVISLDFRLQRPEYLSGGTIDL 336
9791178  278 TTDPt-------pRAYVDLGSTSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPV 350
47566141 292 YTTQk-------pQIYADLGATSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPV 364
9634949  292 YTTQk-------pQIYADLGATSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPV 364
17402851 278 TTDPt-------pRAYVDLGSTSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPV 350
77020115 279 ATDPa-------pRAYVDLGSTSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPV 351
9629155  397 SVNPVVQNSST-DSVSPQGNLSAYALS--TDTKHLFTKSFVEHGFVIGLLSATADLTYQQGLERQWSR-FSRYDYYWPTF 472
19387569 355 LVQSVPQTSSTvEKMTPQGNLAAFSETm-IQNNYLVNKTFTEHSYIIVLAVVRYKHTYQQGIEADWFRgQDKFDMYDPLL 433
12085136 337 QQNPVPQTSSS-TTDSPQGNLAAFSTAseFGNKIGFSKSFVEHGYVLGFIRARGQVTYQQGLHKMWSR-QTRWDFFWPKF 414
9791178  351 NISPIPQTSST-DSTSPQGNLAAYGTA--IGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSR-RTRWDFYWPAL 426
47566141 365 NISPIPQTSST-DSTSPQGNLAAYGTA--IGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSR-RTRWDFYWPAL 440
9634949  365 NISPIPQTSST-DSTSPQGNLAAYGTA--IGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSR-RTRWDFYWPAL 440
17402851 351 NISPIPQTSST-DSTSPQGNLAAYGTA--IGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSR-RTRWDFYWPAL 426
77020115 352 NISPIPQTSST-DSTSPQGNLAAYGTA--IGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSR-RTRWDFYWPAL 427
9629155  473 AHLGEQPVYNKEIYCQSDTvmdp--sgsaVNDVPFGYQERYAEYRYKPSKVTGLFRSNATGTLDSWHLSQNFANLPTLNE 550
19387569 434 ANISEQPVKNREIMVQGNS----------QDNEIFGFQEAWADLRFKPNSVAGVMRSSHPQSLDYWHFADHYAQLPKLSS 503
12085136 415 QELGEQAILNKEIYAQGNA----------TDSEIFGYQERYGEYRFRPSEIKGQFRSNFAESLDVWHLAEYFTVKPSLNK 484
9791178  427 SHLGEQAVLNKEIYCQGPAvkdaqngnvvVDEQVFGYQERFAEYRYKTSKITGKFRSNATGSLDAWHLAQQFENLPTLSP 506
47566141 441 SHLGEQAVLNKEIYCQGPSvkns--ggeiVDEQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFENLPTLSP 518
9634949  441 SHLGEQAVLNKEIYCQGPSvkns--ggeiVDDQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFENLPTLSP 518
17402851 427 SHLGEQAVLNKEIYCQGPAvkdaqngnvvVDEQVFGYQERFAEYRYKTSKITGKFRSNATGSLDAWHLAQQFENLPTLSP 506
77020115 428 SHLGEQAVLNKEIYCQGPAvkdaqngnvvVDEQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFENLPTLSP 507
9629155  551 TFIQSN-TPIDRALAVPDQ---PDFICDFYFNYRCIRPMPVYSVPGLRRI 596
19387569 504 EWLKEDyKNVDRTLALKASdntPQLRVDFMFNTIAEKPMPLYSTPGLRRI 553
12085136 485 TFIESN-TPIERSLVVTRPd-yPDLIGDFWFDYTHVRPMVTYGVPATFGR 532
9791178  507 EFIEEN-PPMDRVVAVDTE---PDFLLDGWFSLRCARPMPVYSVPGLIDH 552
47566141 519 EFIEEN-PPMDRVLAVSNE---PHFLLDGWFSLRCARPMPVYSVPGFIDH 564
9634949  519 EFIEEN-PPMDRVLAVSTE---PDFLLDGWFSLRCARPMPVYSVPGFIDH 564
17402851 507 EFIEEN-PPMDRVVAVDTE---PDFLLDGWFSLRCARPMPVYSVPGLIDH 552
77020115 508 EFIEEN-PPMDRVLAVNTE---PDFLLDGWFSLRCARPMPVYSVPGLIDH 553
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