Conserved Protein Domain Family
PHA00327

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PHA00327: PHA00327 
minor capsid protein
Statistics
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PSSM-Id: 164789
View PSSM: PHA00327
Aligned: 8 rows
Threshold Bit Score: 177.975
Threshold Setting Gi: 12085140
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
9629145    2 SFAENVGRFIGNSVNSVGSvigdglkgfnstqsissakqanllnnlplpsldnvlNIGMFGGLASGLLSYRAAKKQNKVM 81 
77020116   1 MNPEQLTNTLGSAVSGVAQ------------------------------------GLSFLPGIASGVLGYLGAQKQNATA 44 
9791177    1 MNPEQLTSTLGSAVSGVAQ------------------------------------GLSFLPGIASGVLGYLGAQKQNATA 44 
9634952    1 MNPEQLTNTLGSAVSGVAQ------------------------------------GLSFLPGIASGVLGYLGAQKQNATA 44 
12085140   2 ALPALVAAAAPAVIGGIAS--------------------------------------------------YFGQQETNAAN 31 
17402852   1 MNPEQLTNTLGSAVSGVAQ------------------------------------GLSFLPGIASGVLGYLGAQKQNATA 44 
19424729   1 MGPLLGMVGAGAAGSAIGE------------------------------------GLGMLR------------------- 25 
47566144   1 MNPEQLTNTLGSAVSGVAQ------------------------------------GLSFLPGIASGVLGYLGAQKQNATA 44 
9629145   82 QDI-----------ANRQMAFQERMSSTAVRRHVEDLKKAGLNPLLALG-GSASTPQG-----AFYSPVNPMESGLNSAI 144
77020116  45 KQI-----------AREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSkGGASSPAG-----ASWSPNNPVENAMNSGL 108
9791177   45 KQI-----------AREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSkGGASSPAG-----ASWSPNNPVESAMNSGL 108
9634952   45 KQI-----------AREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSkGGASSPAG-----ASWSPNNPVESAMNSGL 108
12085140  32 AKLavwqtrenqaeAARNRKWQEQMSNSAHQREANDLQTAGLNRLLTAT-GGASTPSGgqgqaAGATMENSLKAGITTAF 110
17402852  45 KQI-----------AREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSkGGASSPAG-----ASWSPNNPVESAMNSGL 108
19424729  26 --------------DKWNRDFQERMSNTQYQRARKDMEAAGINPLAQFGsGQASSPSGg---vSGSSFGSNITSMLGSSA 88 
47566144  45 KQI-----------AREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSkGGASSPAG-----ASWSPNNPVESAMNSGL 108
9629145  145 SVADKVFDYQRLaHADFQgRLNSAMSVVQlASAVQDykrnygkfgevaywfdryaGKLLPAMLFYLFRKHPVGRAVSAAN 224
77020116 109 AVQRLTYERKKM-QAELQ-NLREQNRLIR-NQAIRE-------------------GYLAERDKYMRVAGVPVATEMLDKT 166
9791177  109 AVQRLTYERKKM-QAELQ-NLREQNRLIR-NQAIRE-------------------GYLAERDKYMRVAGVPVATEMLDRT 166
9634952  109 AVQRLTYERKKM-QAELQ-NLREQNRLIR-NQAIRE-------------------GYLAERDKYMRIAGVPVATEMLDRT 166
12085140 111 EAKQLGMQIERQ-EKELQ-NLAAQTRKLNiDAKVAE-------------------KRIPESDLKTKFT--TNFSPVIDRV 167
17402852 109 AVQRLTYERKKM-QAELQ-NLREQNRLIR-NQAIRE-------------------GYLAERDKYMRVAGVPVATEMLDRT 166
19424729  89 NM-----------LMQLS-KLKEDAERANfGSKTVQ-------------------TINDARNNMVRSV------------ 125
47566144 109 AVQRLTYERKKM-QAELQ-NLREQNRLIR-NQAIRE-------------------GYLAERDKYMRVAGVPVATEMLDRT 166
9629145  225 SGYaVAKGAKGVNFKFSNMSS 245
77020116 167 SGL-ISSSAKAFKNLFSRKGR 186
9791177  167 SGL-LSSSAKAFKNLFSRKGR 186
9634952  167 SGL-LSSSAKAFKNLFSRKGR 186
12085140 168 INL-EDSNGPRLSNLREEKKP 187
17402852 167 SGL-LSSSAKAFKNLFSRKGR 186
19424729 126 -------------ITLSKRVK 133
47566144 167 SGL-ISSSARAFKNLFSRKGR 186
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