Conserved Protein Domain Family
PHA00149

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PHA00149: PHA00149 
DNA encapsidation protein
Statistics
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PSSM-Id: 222779
Aligned: 6 rows
Threshold Bit Score: 355.228
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
12248123    1 MDEKLFWKPQKLLSYSRILSCVI--GARGVGKSFAIKSKLVDDFLKNGRQFVYLRMYKTEISKn-KSKFFDDIAINYPNT 77 
151266305   2 KKKFSYYSFSKVLSYAGVFNMIM--GARGLGKTYGAKKIVIKNAINKGQQFIYLRRYKTELKG--RNSFFADIQHEFPDE 77 
22855164    1 -----------MLSYDRILNFVI--GARGIGKSYAMKKHPIKRFIKHGEQFIYVRRYKPELKK--IGNYFNDIAQEFPNH 65 
9629547     2 EATEKWYNPQKMLSYNQYLNFVI--GGRGIGKTFALKKYLFKRFIEKGEQFIYLRRNKSELDRidKDKFFTTELLKQVFT 79 
9910039    43 MEKKQYFEISDIESLDPSMRFFIikGKKNIGKTYALLER-MKDLAQKGEKFLFLRISDSEV------KFLANEWTNDVNN 115
194186890   1 MDKSLFYNPQKMLSYDRILNFVI--GARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAK--VSNYFNDVAQEFPDH 76 
12248123   78 KFEVKG----N------------------------DFYIN--GKLAGYAIPLSGWQALKSSSYPNVYTIFFDEFVRE-KD 126
151266305  78 EFRVEGqfaqR------------------------KVEKK--WETIGYFIPLSTAQANKSIAYPNVYTIIFDEFIID-KG 130
22855164   66 EFKVKG----R------------------------QFCID--GKLTGWAIPLSAWQSEKSNAYPMVTTIIFDEFIRE-RD 114
9629547    80 NFEVIDsdasKihtkiifradnmeeeenilvlsstKIILN--GKIVCYLKSLSTWVDLKGSEYDEVMSILYDEVLIDvTS 157
9910039   116 PFYVKA----N------------------------KIYVKqtKEHIGLISHIKNLQKLRSLQYNDYSHIFFDEFVA--FD 165
194186890  77 ELVVKG----R------------------------RFYID--GKLAGWAIPLSVWQSEKSNAYPNVSTIVFDEFIRE-KD 125
12248123  127 LTGYPPNVVDS-------LLNVMDTVFRHRVNdpaVRVICACNAVTLVNPYFLYFGFYPNPNQEFS--KNDSIVVQIVKN 197
151266305 131 SLRYLPDEAKV-------FMDFYSTVDRYQDR---VRCLMLSNAVSIMNPYFIRFHIEPKEGISRH--AEGFIVTDFVNS 198
22855164  115 NSGYIPNEVDA-------LLNLMDTVFRTREN---GRCICLSNAVSIINPYFVYFGLVPDINKRFN--AYKHILIEIPDS 182
9629547   158 KKRYLDNEVEA-------LLNFIFSVFRRRDG---CHAYLLSNASNFNNPYFAFLKFYDDNGKRFYnlKQYATLIEFPPH 227
9910039   166 EKSYGSSDSNAsltlvrnFIRLIMDVQRAKED---IKIFCFGNNDIAVDIFSKYFRL--SINEPYQ--VDNEAKITFINL 238
194186890 126 NSNYIPNEVSA-------LLNLMDTVFRNRER---VRCICLSNAVSVVNPYFLFFNLVPDVNKRFN--VYDDALIEIPDS 193
12248123  198 EDYA-NARRDNRFGKLIS--GTAYEEMSIDNKFTQD------SDLFVQKRSKNSQFNFGIRYGGKNYGVW---------V 259
151266305 199 EQFQ-SEVAHTRFGSFITnyAEDYADYSISNKFADN------YDDFVMRKTGKAKYAFSLRCPDGEVSIW---------I 262
22855164  183 KDFS-DERRKTKFGQLID--GTEYGEMSLDNEFVND------SDVFIEKRSKNSKFVFSIVYKGMRMGVW---------V 244
9629547   228 SAFQtEEEKESGFFKLLS--KSSIYESVANNEFQIK------NDKNIAKIKGLKSRLYSFYCDGTFLTGY---------- 289
9910039   239 RHYY--QGVRSSYAK-----GLAFYDLVLDQYFSSNktmediTKLAVYDSLHNGVIRYNILLNDNYYTLVellhktedkL 311
194186890 194 LDFS-SERRKTRFGRLID--GTEYGEMSLDNQFIGD------SQVFIEKRSKDSKFVFSIVYNGFTLGVW---------V 255
12248123  260 DREQmlmYLSEAYDPKSNQI-FALTSDDL--TEKNVLVggWRGNYKLTKLVSAFKKGMLRFENQVVRKHGYDILKQ 332
151266305 263 DGGT---WFAQRRQPRGDRVrWAYKVSDL--REGERLL--MYGDKVLSIMRSTYRKGRLFSDSPETRNMFAEIFVR 331
22855164  245 DTQQmllYLTTDHDPSTKNV-YALTADDL--EEGMILVsnYKKNYHIRKLCSAFMNGQLRFDNQLMRTIGYEMFKK 317
9629547   290 -YIDnmvYIAKGFDKNLTA--YCLEVEQV--EDGFVYL--NKASALGKTLRSLYLKNMFIYEDLETKNKFIEVINH 358
9910039   312 ELTNsfvITNTSKPEDNKRPlIALTKKDYinDSNAVELidLQKRVLIQQWSNLIKKHKLKFTDKVIEKNFINFLAF 387
194186890 256 DVNQglmYIDTAHDPSTKNV-YTLTTDDL--NENMMLItnYKNNYHLRKLASAFMNGYLRFDNQVIRNIAYELFRK 328
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