5IKF


Conserved Protein Domain Family
zf-CCCH_7

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pfam18586: zf-CCCH_7 
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Chromatin remodeling factor Mit1 C-terminal Zn finger 1
The Snf2/Hdac Repressive Complex (SHREC) is the fission yeast nucleosome remodeling and deacetylation (NuRD) equivalent and plays a major role in transcriptional gene silencing (TGS) within S. pombe heterochromatin. SHREC consists of the chromatin remodeler Mit1, the HDAC Clr3, and Clr1 and Clr2 proteins. The Mit1 C terminus contains two zinc binding motifs (CCHC zinc fingers) at the C-terminus onto which the alpha helices from both Clr1 and Mit1 pack. The Mit1 chromatin remodeler uses its C-terminal domain to intimately bind to the N-terminal half of Clr1 to integrate into the SHREC complex. This is entry represents the first C-terminal zinc-binding domain found on Mit-1.
Statistics
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PSSM-Id: 376012
Aligned: 3 rows
Threshold Bit Score: 132.729
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5IKF_A         80 KEDEFNKTLSTINLEVANKLTSSEYINDSEMqliDDPVFypPYEIIEKNHQLVGRSLSKAVLDNFFLLSSLSDNVRCRCC 159  Schizosacchar...
XP_002175104 1213 DDNNTGETVKPTEYQVKPSVELSDELIELPA---DSPAY--SNKVFEPEHRLVLNDVSELLLFKHLDSYRVPDGPRCRFC 1287
XP_013017473 1244 TRLKAASNPMIFNDLNQRAIWKPQYVRSFQK---DDSLF-------AHKNLLVANRIPKFVFDNFLATFFDDKSIACKCC 1313
5IKF_A        160 GIKHLPAHCPLSIVP 174  Schizosaccharomyces pombe 972h-
XP_002175104 1288 DINHVPGNCGLSTVP 1302
XP_013017473 1314 GIEHVPGRCPLNKVP 1328
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