3IVP


Conserved Protein Domain Family
DBD_HTH
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pfam18430: DBD_HTH 
Putative DNA-binding domain
This is a putative DNA-binding protein dimerization domain found bacterial proteins such as CD3330, (a transposon-related DNA-binding protein from Clostridium difficile). Crystal structure analysis suggests that CD3330 N-terminus is involved in dimer formation and also in crystal packing but the C-terminus is open to solvent.
Links
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Statistics
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PSSM-Id: 408227
Aligned: 14 rows
Threshold Bit Score: 38.0532
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3IVP_A                       80 KSTKRRQLENKIDNFTDADLVIXESVADGIVKSKE 114
CBL40199                     80 KSTKRRQLENKIDNFTDADLVIMESVADGIVKSKE 114
WP_008393055                 80 KSTRRIQLEKQLDNLSDKDLVIMGSVADGIIKSRE 114 Lachnospiraceae
ERI68852                     80 KSTRRRHIEKQMDSFTDKELILMEALAKGITDSKE 114
WGS:ADGE:HMPREF0389_00634.1  80 KSTRRLQVEKLLDSFTDKELSLIEVLANGISEARN 114
WP_016221089                 82 KSSIRRRLDAMLDRLDDKELSVVEATVNGLCKAKE 116 Eubacteriales
EOS38075                     85 KSAMRKRLDVILDKLNDRDLSILEATAIALCKAKE 119
Q187W4                       82 KSTVRRQIDSSLDLLSDDELKIIQGTIDGILNSRE 116 Clostridioides difficile 630
WP_016307802                 80 KTTLRQRLDVLLNTFDDAELTIIAGAAHGICKAKE 114 Lachnospiraceae bacterium A2
EOS40311                     78 KSTLRRQLDALFDTFDDSELTIIAGTAQGICTAKE 112
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