1SLQ


Conserved Protein Domain Family
Rota_VP4_MID

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pfam17477: Rota_VP4_MID 
Rotavirus VP4 membrane interaction domain
This entry represents the VP4 membrane interaction domain.
Statistics
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PSSM-Id: 407512
Aligned: 3 rows
Threshold Bit Score: 355.415
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
pfam17477 is the only member of the superfamily cl38750
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1SLQ_A   3 ANEDIVVSKTSLWKEMQYNRDITIRFKFASSIVKSGGLGYKWSEISFKPANYQYTYTRDGEEVTAHTTCSVNGMNDFNFn 82 
A2T3T2 250 ANEDIVISKTSLWKEMQYNRDITIRFKFANTIIKSGGLGYKWSEISFKPANYQYTYTRDGEEVTAHTTCSVNGVNDFSFn 329 Simian rotavirus A/SA...
Q82040 260 INVSNIISKDSLWQEVQYVRDITLQCKILSEIVKGGGWGYDYTSVTFKTVNHTYSYTRAGENVNAHVTISFNNVKERAY- 338 Human rotavirus C/Bri...
1SLQ_A  83 GGSLPTDFVISRYEVIKENSYVYVDYWDDSQAFRNMVYVRSLAANLnsvictGG---------DYSFALPVGQWPVMTGG 153
A2T3T2 330 GGYLPTDFVVSKFEVIKENSYVYIDYWDDSQAFRNVVYVRSLAANLnsvmctGG---------SYNFSLPVGQWPVLTGG 400 Simian rotavirus A/SA...
Q82040 339 GGSLPTDFKIGRFDILDTDSYVYIDYWDDSEIFKNMVYVRDVRADI------GGfqysyssemSYYFQIPVGSYPGLHSS 412 Human rotavirus C/Bri...
1SLQ_A 154 AVSLHSAGVTLSTQFTDFVSLNSLRFRFRLTVEEPSF----SITRTRVSRLYGLPAANPNNGkeyyEVAGRFSLISLV 227
A2T3T2 401 AVSLHSAGVTLSTQFTDFVSLNSLRFRFRLAVEEPHF----KLTRTRLDRLYGLPAADPNNGkeyyEIAGRFSLISLV 474 Simian rotavirus A/SA11...
Q82040 413 RLQLVYDRCLLSQQFTDYAALNSLRFVFRVVSTSGWFittgDINTRRVASGTGFAYSDGHVA----NTVGTISFISLI 486 Human rotavirus C/Bristol
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