4HQB


Conserved Protein Domain Family
DdrB

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pfam12747: DdrB 
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DdrB-like protein
This family includes the Deinococcus DdrB protein which is a ssDNA binding protein. This family also includes some possibly distantly related cyanobacterial proteins. However, these are not strongly supported. The structure of DdrB is known.
Statistics
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PSSM-Id: 372287
View PSSM: pfam12747
Aligned: 7 rows
Threshold Bit Score: 148.821
Threshold Setting Gi: 306986357
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4HQB_E             13 DLGARVTVNVEHESRLLDVQRHYGRLGWTSGEIPSG----------------------GYQFPIENEADFDWSLIGARKW 70  Deinococcu...
jgi:Cyan7822_6453  14 SLLNPVVSILQGLRELFVLVREVKNLLAQQNELLKQnnellqnlldkenssnqvevnpNFQAGLSDYPTFDWAKIGATVI 93  Gloeothece...
WP_014683760        9 DLGARVSVEVESADKLLEVQRQYGRLGWTSGEVPQG----------------------GYLFPLDNEQDFDWSLIGARKF 66  Deinococcu...
jgi:Deipr_2350      9 DLGAKVTVDVERPEQVLDIQRHYGRLGWTSGEVPAG----------------------GYQFPLDNSDDFDWALIGAREW 66  Deinococcu...
WP_015236121        9 DLGAKVTVDVEGPETLLDVQRRYGKQGWYSGDVPAG----------------------GFQFPLDNEADFDWSLLGGRKF 66  Deinococcu...
jgi:Ocepr_2297     10 PIGVPVEAELEDGEDLYAVLRERGAAGWTAVRLRYQ----------------------GIVLPLACERCFDWRLLGAKVV 67  Oceanither...
jgi:PCC7424_5469   14 TLLNPVVSIYKGTQNLWVLLRDVKNLLNRQNQLLEKnnelleqlltkeitsnteefepNFKAMLNEYKNFDWDTIEARVI 93  Gloeothece...
4HQB_E             71 KS-PEGEELVIHRGHAYRRRELEAVDSRKlklpAAIKYSRGAKVSDpqhvrekadGDIEYVSLAIFRGG 138 Deinococcus radiodurans
jgi:Cyan7822_6453  94 STdSDGPTVVEYEGLAFKRRRSSIDDVKG----AAIWFSCSQKDNK---------DQLTYLRLITFKEQ 149 Gloeothece verrucosa ...
WP_014683760       67 TN-NEGEDMVMHRGHAYRRRELEAVDSRKlklpAAIKYSRGAKNTDpehvrekadGEFEYVTLAIFRGG 134 Deinococcus gobiensis
jgi:Deipr_2350     67 TN-PEGETMILHRGHAYRRRELEAVDSRKlklpKAVKYSRGAKPTDpehlrekgdGEIEYVTLAMFRGG 134 Deinococcus proteolyt...
WP_015236121       67 VL-EDGEEAVYCRGSVWKRRELAAVDTRKlrlpAAVKYSRGARPTDpehlreksdGDIEYVTLAIFRSG 134 Deinococcus peraridil...
jgi:Ocepr_2297     68 ES-GGFVEAVTLGGAVYKRRDLA----ERrdlpRVIKYSRGAREGDpphlvegsnQD-RYVTLVRFVge 130 Oceanithermus profund...
jgi:PCC7424_5469   94 SSdGEGVTVVQYRGKVFERRRSSVDDVKG----AAIWFSSATKTPD---------GKVKYLKLITFREK 149 Gloeothece citriformi...
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