3K6O


Conserved Protein Domain Family
NigD_N

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pfam12667: NigD_N 
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NigD-like N-terminal OB domain
This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroides species. Proteins in this family are typically between 234 and 260 amino acids in length. These proteins possess an N-terminal lipoprotein attachment site. The family includes NigD a protein found in the Nig operon that encodes a bacteriocin called nigrescin. It has been suggested that NigD may be the immunity protein for nigrescin (NigC) because it is directly downstream. This domain has an OB fold.
Statistics
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PSSM-Id: 403763
View PSSM: pfam12667
Aligned: 74 rows
Threshold Bit Score: 33.8373
Threshold Setting Gi: 524136101
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3K6O_A        20 AT-VEKqPQYD--APYLVLDNGEKLWVV--QHIV--PYRD-LKaGERIFGNYSFLEAgESGFAYNIRLND-YTL 84  Bacteroides vulgatus ...
WP_005850825  33 ID-LKTdHTGT--GRYLITDEGTE-WRI--QSRTglDGLA-PDtTYRTVTMYAPLTDsEE-AEKEAMLYNtQLV 98  Bacteroides
WP_117574202  33 ID-LVTdNTGT--ATYLKSDEG-VIWSI--QPRAglDGLT-PDsVYRTVTMYAPVNT-SQPSSLEAILYNtQIA 98  Bacteroides
CCX62329      40 LT-AYSgGDGA--LERVLTDDGEEYAVL--VDDSh-SHIR-PDsLVRIVSNYEWVHE-EGG--EGVHLYAvSAA 103 Bacteroides sp. CAG:598
WP_025835145  35 LT-AFSgADGY--LQSVVTDEGETLPVV--EDKTk-TNIE-ANaSVRVISNYASEVT-ADG-TASAVLYAlSGV 99  Bacteroides rodentium
Q5LI29        37 LT-AESgADGR--LQTLVTDKGERLVVA--EDRTe-SELL-PNsSSRVVSNYEVLSS--VGGRKEIRIYAlANT 101 Bacteroides fragilis ...
Q8A1F1        37 VT-VKAgADGL--IQSLLPDKGELLTVA--KDRTg-STIS-PNsARRVISNYEVNPE-----DATAVIYSlQSV 98  Bacteroides thetaiota...
CBK69623      36 VT-VEAgEDGR--IQTLIPDKGEALPVA--EDRTg-STIA-ANtSRRVMSNYEVLPD---G--SAATIYSlQSL 97  Bacteroides xylanisol...
CCY65073      39 VE-AQTdNNAN--IVSIETDDGERMFLTgaINVA--WAER-PDtVYRALLYYNKVEA-DDGTNNAEPLGi-SQV 104 Prevotella sp. CAG:1124
CCZ13821      39 AEfVEAfTSSDtiVMKAVTDDGASLTFT--QRIKt-SWTSvPDsSYRALLYYSKGDN----PVRALSLRQ-VPV 104 Prevotella sp. CAG:1092
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