Conserved Protein Domain Family
LdpA_C

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pfam12617: LdpA_C 
Iron-Sulfur binding protein C terminal
This domain family is found in bacteria and eukaryotes, and is typically between 179 and 201 amino acids in length. The family is found in association with pfam00037. LdpA (light-dependent period) plays a role in controlling the redox state in cyanobacteria to modulate its. circadian clock. LdpA is a protein with Iron-Sulfur cluster-binding motifs.
Statistics
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PSSM-Id: 403723
View PSSM: pfam12617
Aligned: 59 rows
Threshold Bit Score: 202.767
Threshold Setting Gi: 427346234
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8YUN1       172 MVLSAGIDAVEIHTKVGRLAEFKQLWQVISPWADQLKVLAISCPD-G-----KHLVEYLQSIYELIS----P-LPT---T 237 Nostoc sp. PCC ...
Q46IQ7       157 LLTTIKPDAVEIHTAPGRGKEFEKTIKEIFKGDLQLKRLSVSCGLqGhginhEQLAEELWLRHKFLRihnqK-------- 228 Prochlorococcus...
XP_002973498 166 llCLDEVDAVEIHTGQGRLEAFHQLVTNLGSSFDHLKLVAVSVPDlG-----DSMISSMTSMYESMK----PyVKC---A 233 Selaginella moe...
ERN03128     182 LLKRNNVDAIEIHTSAREINSFEKLWNSLADFVGHLNLVAVSLPDlG-----ESTVDAMNKMYTIMN----PfLKC---Y 249 Amborella trich...
EEF43092     215 LLERNDVDAIEIHTSGRQMAPFKKLWDGLGNSLRFLKLVAVSLPYsG-----DSTVSSMNTMYSAME----PqLNC---L 282 castor bean
KRH36973     239 LIKRNDVDAMEIHTSGRQSTLFKELWSALGESVGYLKLIAVSLPNgG-----DSTISSMNKMFSIMK----PnLQS---F 306 soybean
NP_001136908 209 LLKRDDVDAIEIHTTGKGTDMFNTLWDNLSGSINNVKLVAVSLPDiG-----ESTVDLMNTIYTIME----PhFKG---Y 276 Zea mays
XP_003568881 213 LLKRSDVDAIEIHTTGKGTDMFSILWSSLGESINSVKLVAVSLPNaG-----ESTIDFMNAIHTIMQ----SyREG---Y 280 stiff brome
EMS66981     206 LLKRSDVDAIEIHTTGKGIGMFSTLWNSLGESINNVKLVAVSLPNaG-----ASTIDFMNATYTIMQ----SnLEGnsaV 276 Triticum urartu
Q75M00       205 LLKRNDVDAIEIHTTGKGTDMFNTLWSNLGESINNVKLIAVSLPDvG-----DSTVNLMNAIYTTMQ----ShLQG---Y 272 Japanese rice
Q8YUN1       238 LIWQTDGRPMSGDIGDGTTLAAVKLGQKVLAA-KLP-GYIQLAGGTNSYTVAKLKAMGLLKKAREqgagrevarretlra 315 Nostoc sp. PCC ...
Q46IQ7       229 PLWQIDGRRMSGDLGAGAAKIAVKLWERLRPI--APpGPLQLAGGTNESTIKYLPGIK---------------------- 284 Prochlorococcus...
XP_002973498 234 NLWQLDGRPMSGDIGKGATRAAVILGGRVLAAlDRPpGFLQLAGGTNSHTREALELDGLVNNGNEs-------------- 299 Selaginella moe...
ERN03128     250 NLWQLDGRPMSGDIGRGATRDAIAFAARMSSIkDKPhGFLQLAGGTNFHTVGGLKEAGLFQTPNIqedgndvh------- 322 Amborella trich...
EEF43092     283 NLWQLDGRPMSGDIGRGATRESIAFAVRLAAAkDKPnGFFQLAGGTNAHTVDGLKREGLFQTTLVsdnsedn-------- 354 castor bean
KRH36973     307 NLWQLDGRPMSGDIGRGATKESIAFAVQLAKAkERPpGFLQLAGGTNAHTIDGLKKEGLFQTT-Iseylhddt------- 378 soybean
NP_001136908 277 NLWQLDGRPMSGDIGRGATRETVSFAAHVASMsERPpGFYQLAGGTNSYTVDYLKKAGLFQSSNWnsgtat--------- 347 Zea mays
XP_003568881 281 NLWQLDGRPMSGDIGRGATRETVSFAVDLTSMsDRPqGFYQLAGGTNLYTVDSLKNAGLFKATTLpgtttt--------- 351 stiff brome
EMS66981     277 HMVYATADPLS-----------ISMLLLWAYFsYFDlCFYQLAGGTNLYTVDCLKKAGLFMARTLpgtrtt--------- 336 Triticum urartu
Q75M00       273 NLWQLDGRPMSGDIGRGATRETVSFAVHLSSMsNRPpGFYQLAGGTNSYTIESLKKAGLFQSTTFpgaats--------- 343 Japanese rice
Q8YUN1       316 nfptgryangsmgeissplppalrvrsrlwgkpprprcltsrPSASIAGVAYGSYARVMLSPIIEQLENKEVSNSsvkat 395 Nostoc sp. PCC ...
Q46IQ7       285 ---------------------------------------------GPEGIAFGGKARKIIQPWLEEAQRKGIS------- 312 Prochlorococcus...
XP_002973498 300 ------------------------------------------MIAGIAGIAFGGYARKIVCGLLKELEATKSTR------ 331 Selaginella moe...
ERN03128     323 ----------------------------------qaerfsgwPYASIGGVAYGGYARKIVGRVLNKMQSEEG-PAh---- 363 Amborella trich...
EEF43092     355 ------------------------------------ksmtssPHSLIGGIAYGGYARKIVGRVLRSMQSQHE-FAc---- 393 castor bean
KRH36973     379 ----------------------------------sttsssdsSHALISGIAYGGYARKIVGRILRSMQSQHGAAAs---- 420 soybean
NP_001136908 348 ------------------------------------semassHQALIGGIAYGGYARKIVGRVLRKIPEQFG-RVh---- 386 Zea mays
XP_003568881 352 -------------------------------------ekfgsQQALIGGIAYGGYARKIIGRILRKIPVQLG-RMr---- 389 stiff brome
EMS66981     337 -------------------------------------ekvgsQEALIGGIAYGGYARKIVGRVLRKIPSELG-RVr---- 374 Triticum urartu
Q75M00       344 -------------------------------------gvtdcQQAFIGGIAYGGYARKIVGRVLRKIPAQFG-HAr---- 381 Japanese rice
Q8YUN1       396 vrLEEEPELLWQAVELARSLVSQ 418 Nostoc sp. PCC 7120
Q46IQ7       313 --LREWPEGWEAALSEAKRLINP 333 Prochlorococcus marinus str. NATL2A
XP_002973498 332 --LEDHPELLFKSISITGELVWP 352 Selaginella moellendorffii
ERN03128     364 --IERYPDYLVEALEEALSLVGP 384 Amborella trichopoda
EEF43092     394 --VEDHPEHLFEALKEALGLVGt 414 castor bean
KRH36973     421 --IEEHPQHLLMALKEALALVGP 441 soybean
NP_001136908 387 --IEDHPDHLLEALQEAMSLVGP 407 Zea mays
XP_003568881 390 --IEDHPGYLLEALQEAMSLVGP 410 stiff brome
EMS66981     375 --IEDHPGYLLEALQEALSLVGP 395 Triticum urartu
Q75M00       382 --IEDHPDYLLEALQEALSLVGP 402 Japanese rice
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