Conserved Protein Domain Family
TraD_N

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pfam12615: TraD_N 
F sex factor protein N terminal
This domain family is found in bacteria, and is typically between 96 and 107 amino acids in length. The family is found in association with pfam10412. TraD is a cytoplasmic membrane protein with possible DNA binding domains. It is part of the bacterial F sex factor complex.
Statistics
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PSSM-Id: 403721
View PSSM: pfam12615
Aligned: 8 rows
Threshold Bit Score: 88.2096
Threshold Setting Gi: 288859960
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013200036           32 WMVLLFLVATGGLFWAVTPDDTLRNGFWYws-------grLFSGFLPLMDRs-sPATWDIswhcepaklCTTKLTLAQLL 103 Erwini...
WP_025386779           34 VCLFLWVVLTGLITWLVTSPEKFYQAIAY-----------YYASFLNLVGQ---KHTFTLhf-----hgKNYQQNVDVIL 94  Legion...
wugsc:KPN_pKPN4p07158  32 VLFILFWVLCGLMLMYRLSWQTFVNGCVYww-------ctTLGPMRDIIRS---QPVYTIqy-----ygQSLEYTSEQIL 96  Klebsi...
Q93GL8                 32 CLFIFFWILVGLVLWVKLSWQTFVNGGIYww-------ctTLEGMRDLIKS---QPVYEIry-----ygQTFRMNAAQVL 96  Salmon...
Q6LW78                 35 WMGYGILLLTALLCFSFIDQDTLKGTYYYwr-------ysMVGKIKPDTHE-----VFTLwq------gVTYKSTLGQQR 96  Photob...
Q7MBL9                 40 AAIWAVIALTGFLTWLRAPDNAFWSVFYYwr-------nqLYANLGHDLNSe-vTTFWNG---------KRYVGTLASQL 102 Vibrio...
CBJ13945               36 WAVLGFVVLFSLIMAFYASSELKLVVLHHisrflvkfhngEYVLWTNLNGSkitAFFYQK-----------------SPL 98  Legion...
CAM79179               30 NVFTIGLGLSIFWIICRLYQKVFLSSLYYfa-------ieRYVQLKLTIGE----HFYDI---------DQIGIVFYSLR 89  Orient...
WP_013200036          104 ASEWMQVQGAQLL----------------QNLKLCAAGCGTVALALF 134 Erwinia billingiae
WP_025386779           95 HYPYYKENATHMV----------------DLLGKSSLAAFVLSFVLG 125 Legionella
wugsc:KPN_pKPN4p07158  97 ADKYTIWCGEQLW----------------TGFAFAAVVSLVICIVTF 127 Klebsiella pneumoniae subsp. pneumoniae...
Q93GL8                 97 QDKYTVWCGEQLW----------------SAFVLAACVALVICLITF 127 Salmonella enterica subsp. enterica ser...
Q6LW78                 97 LNPVFIDANRQFW----------------LSLQLYLLASLISGLTVF 127 Photobacterium profundum
Q7MBL9                103 ENTQLITLYDNVI----------------RQAQINFLIALAIAFAIL 133 Vibrio vulnificus YJ016
CBJ13945               99 IQASVHLAQETLW----------------RKAQISLIFGGAVYLLIT 129 Legionella longbeachae NSW150
CAM79179               90 FKKWIHLNAQDFLhefytgqhgfkiqqlwEFLINSALLEGLIVFAIG 136 Orientia tsutsugamushi str. Boryong
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