Conserved Protein Domain Family
Cryptochrome_C

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pfam12546: Cryptochrome_C 
Blue/Ultraviolet sensing protein C terminal
This domain family is found in eukaryotes, and is typically between 113 and 125 amino acids in length. The family is found in association with pfam03441, pfam00875. Cryptochromes are blue/ultraviolet-A light sensing photoreceptors involved in regulating various growth and developmental responses in plants.
Statistics
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PSSM-Id: 403665
View PSSM: pfam12546
Aligned: 15 rows
Threshold Bit Score: 134.145
Threshold Setting Gi: 1552062940
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_015688643 393 PIAFPPELQ-MEVDRAPAQPTTVHGpTta--gRRRQDQMVPSMTSSLVRA--ETELSADFDNNSMDSRPEVPSQ-ALFqp 466 malo sina
EEF48505     494 PIAFPQDIQ-MEENLEPIRNNPPIP-I-----RRYEDQMVPSMTSSLLRVe-EEETSSDLRNAAEDSRAEVPRD-VNVn- 563 castor bean
ERN14624     346 PLDFPQEE--MEVDNQPARPTGQIGaT-----RRLADQMVPSMTVSSFRVeeEEEPSSNTGS-SRDNRPEVPSN-ASFgs 416 Amborella trich...
XP_015692202 528 PIEFPQELQ-MEIDREPARVT-ANVpTt---aRRREDQMVPTMTSSLNRA--ETEISADFLN-SVDSRAEVPAH-VHFep 598 malo sina
BAJ98810     394 PIEFPQDLQ-MEVHWEPARVA-PNVlTt---aQRRQDQMVPTMTTSLNRV--ETEISADLGN-SVDSRAEVPFR-MHFep 464 domesticated ba...
AQK53150     523 PIDFPQELR-MEVDRQPAQPAIIHTpVva--gWRREDQRVPSMTSSLIRA--ETELTADFGNTSEDSRPEVPSN-IHLqa 596 Zea mays
XP_004952854 523 PIAFPQELQ-MEVDRQPVRHA-TQTpMma--gRRREDQMVPSMTSSFIRA--ETELTADFGNISEDSRPEVPSN-MHLqp 595 foxtail millet
BAJ92893     249 PIAFPQELQhMEVD----RAT-SHTpAtagpaRRRADQMVPSITSSLVRAetETELSAVF-E-SEVSRPEVPSQ-VHFqa 320 domesticated ba...
KQJ99997     525 lIAFPQELQqMEVDREMVRGT-IHIpTpa--gRRRADQMVPSMTTSLVRA--ETELSVDFGS-SEVSRAEVPSQ-GHFqp 597 stiff brome
AZZ09410     518 PIEFPRDIT-MEET-EPTRLNPV---------RRYEDQMVPSITTSLIRPeeDQESSLSLRNSGGDSRAEVPRNmVNTn- 585 Chinese cabbage
XP_015688643 467 --rME-REETV---DGGGGSgggtAARTNgggqQqhNFQTTIHRAR-G-IAPSTSEASSSWT 520 malo sina
EEF48505     564 ---QEqRR------NLGVAQ----AFRSN----N--LPNVNILRGLpN-TEDSTAESSSSTR 605 castor bean
ERN14624     417 --eADrRDEVLnlgNMGELErernASEFN----VsvSLQNAVHF---------TAESSSSLR 463 Amborella trichopoda
XP_015692202 599 --gTE-RQDIV---HTAAGN----AAGTNvi-hGhnNFQQPQHRMR-NaLAPSVSEASSGWT 648 malo sina
BAJ98810     465 --rTE-REEII---Q-STGN----AVGTNgi-hHhnNFQQPQHRMR-NiFAPSVSEASSSWT 513 domesticated barley
AQK53150     597 --rAE-REETV---DGATGN----TVRVNgn-qQqqNLQNNMHRVL-G-IAPSISEASSSWT 645 Zea mays
XP_004952854 596 --rTE-REETV---DGGTAN----AVRMNgn-hQqhNFQNNTHRVL-G-VAPSVSEASSSWT 644 foxtail millet
BAJ92893     321 qprMEsREQVA---SDGT------AARYN----QqyTL----HRVQgGgIAPSTSEASSSWT 365 domesticated barley
KQJ99997     598 --qMEiRE-VV---NGGT------AATNNgvhhQqyNLQNNLNRVR-GgVAPSTSEASSSWT 646 stiff brome
AZZ09410     586 ---QArQQEAR---ADPVSN----QVTAM-------IPEFNIRIVAeN-TEESTAESSSSGr 629 Chinese cabbage
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