Conserved Protein Domain Family
Astro_capsid_p

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pfam12226: Astro_capsid_p 
Turkey astrovirus capsid protein
This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains.
Statistics
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PSSM-Id: 371974
View PSSM: pfam12226
Aligned: 13 rows
Threshold Bit Score: 352.508
Threshold Setting Gi: 343458941
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ACR54274 489 AYFMSNISFLATNGSGVPKaMYQAATilr----------ikMDISGVVKN-APLCFFRKLSAPHaFFTTHpdstlstFVG 557 California sea lion...
O72163   434 LNVIGETSTASLPSSNGIF-WLSAPSdr------------sIKVGARQTRyFPAAGFQLLELVD-FYTAN-------FRE 492 Mamastrovirus 2
AEM37622 479 GWIIFNCATSYLLGTPFA--AKNGTLrig----------lkSKANGDIIK-VPTVFCARINTPHcFLKSNengdilgLIS 545 California sea lion...
AEM37631 481 DWMIANM-QLSFPNGGYAKvVKSTTLrir-------------wsISEVEHgCPIVFWMRVHAPHsFFKSDaegdnlsFVG 546 California sea lion...
BAF91368 432 FKVILTFGAPMSPNANNKQnWVNKPLdaps-------ghynVKIAKDVDHyLTMQGFTSIASVD-WYTTD-------FQP 496 Human astrovirus 1
ABO65208 431 LRVLLTVGSIMSPNSADRQvWLNKTLtapgtn----sndnlVKIAHDLGHyLIMQGFMHIKTVE-WFTPD-------FQP 498 Human astrovirus
Q14V18   431 MRVLLTVCSIMSPNSADRQvWLNKTLtapgsntsgvnpdnlVKIAHDLGHyLIMQGFMHIKSVE-WYTPD-------FQP 502 Human astrovirus 1
Q96818   433 FKVVLTIGQPLAPNTLNNQtWVNKTTtapq-------gqhvVKIAKDTSNyTTMQGFTPISNVT-WYTED-------FQP 497 Human astrovirus 7
Q9ICH9   432 FKVIMTAGALVQPNRSYSQnWLFKTVtppt-------ghdaARVGWNTQHyLTIQGFLLIDSLE-WLTPN-------LQE 496 Human astrovirus 4
Q9IFX1   432 FRVLLTVGPPMAPNTANSQnWVNKTIvppe-------nqytVKIGIDLEHyTTMQGFTPVESVS-WYTAD-------FQP 496 Human astrovirus 8
AFE84778 431 LKVILTVGQPVTPNEINKQnWVGKTNtpt---------eevIKIGVNTQSyNVMNGFTMISSID-WYDEE-------MQP 493 Human astrovirus 5
ADJ17721 432 LKVLLTVGNPISPNETNKQtWVNKTIepp---------gavVKIGRDTQHyCTMNGFTLITKVD-WFTEE-------FQP 494 Human astrovirus 6
ABG00150 434 FNVVLTTGQPLAPNTVTKQnWLNKTTvspq-------nhhvVKIAKDVNNyTTMQGFTPISSVE-WYTAD-------FQP 498 Human astrovirus 3
ACR54274 558 TNLPPAIPGFEFQNTSNQkf-gNVHFYSTQVVRRDTDYYKY----DFYVINI---TARTNLTTLGDKFDMAEts-gyAAI 628 California sea lion...
O72163   493 AQQPQPIPGAGVWQGDYK----MGDVYAIQQYQHAKSNYETqv-tTVALVRTkgdTPNYTWTAQGRYFYRAS-----GND 562 Mamastrovirus 2
AEM37622 546 HNQLPPTAGINLVSQNGNtvygTVHAYGSHIVATSGTAEQKkvkyDFYLVKV---TTATASTEQTDAKNIYIea-gtNIM 621 California sea lion...
AEM37631 547 TALPPSIDEAKLVNGSGEvf-gTVHAYSSHLITSGNAKFKY----DFYLVKI---IKDGASHDGQDPKTIVTmp-ghNTL 617 California sea lion...
BAF91368 497 SEAPAPIQGLQVLVNSSK----KADVYAVKQFVTAQTNNKHqv-tTLFLVKV---TTGFQVNNYLSYFYRASas-gdATT 567 Human astrovirus 1
ABO65208 499 SRDPTPIAGMSVMVNITK----KADVYFMKQFKNSHTNNRHqi-tSIFLIKP---LADFEVQSYMSYFKREShdnndGVA 570 Human astrovirus
Q14V18   503 SRDPGPISGMSVMVNITK----KADVYFMRQVKNSHTNNRHqv-----------tSNCADLRTKLHELLQEGftktmTML 567 Human astrovirus 1
Q96818   498 SEEPPPISGLQVLVDSRK----KADVYAVQQYLNHPSNTKDql-tSIFLVKV---TTSFQVNNHLSYFYRAAgt-gtAVE 568 Human astrovirus 7
Q9ICH9   497 SQEPPSIPELGVYVGIHK----KALVYFMQQYVNPHTNNKHqv-sSIFLIKP---TENFSVTNYMSYFFRESqs-dqNVA 567 Human astrovirus 4
Q9IFX1   497 SDEPSPIPGLYARVNNTK----KADVYGVQQFKSSHTNNRHqi-tSVFLVRV---TTSFQVINYTSYFIRGAes-gsNVS 567 Human astrovirus 8
AFE84778 494 LEVPAPMSDLLVMKGINK----KADVYAAQQYKNSISNNKHqi-tSVYLIRV---KENFQVTNHLSYFFREKvd-ttAVE 564 Human astrovirus 5
ADJ17721 495 SEEPAPVQGLMVLLDNHK----KADVYAAQQYKNPITNDKQqv-tSVFLVRV---NEGFQVTNHLSYFYRNSvn-tdAVE 565 Human astrovirus 6
ABG00150 499 SEEPTPIPGLQVLVNSSK----KADVYAIQQYLNNQTNNKVql-tSIFLVKV---TTSFQVNNYLSCFYRSYgt-gtTVE 569 Human astrovirus 3
ACR54274 629 QF---NNTESPAGLTLEQSNWYLVGNimktNAAQEAKMFPLFQVNEHlgPithtkkvpaIDQALTWVSNSTILLGRVGPP 705 California sea lion...
O72163   563 NIa-lQKDSTNKNFSIPTNRWMFVYGf---YQYTISGSQPRWVWYTQ--D---------MPSDKKWLADEVLPHVFGVYE 627 Mamastrovirus 2
AEM37622 622 KFs-eRTGDT--RLQLTDQVWYLFGNykqvALGEQGPVYPDFSYNYP--AptltgempvLGPALTWFSNTFSLKMRYGLP 696 California sea lion...
AEM37631 618 NFa-tDTATDARRINLNTNVWYLLGSykqvSDQERAELFPTFSALTV--ApnldgnpaiLGPAMAYISNSVVIKMRVGPP 694 California sea lion...
BAF91368 568 NLl-vRGDTYTAGISFTQVGWYLLTN----TSIVDGALPPGWIWNNV--E---------LKTNTAYHMDKGLIHLIMPLP 631 Human astrovirus 1
ABO65208 571 NLt-vRSMTSPKTVRFQAGEWYLLTS----TTLKENNLPEGWVWDRV--E---------LKSDSPYYADQALAYFITPPP 634 Human astrovirus
Q14V18   568 SIsqvRSMTTTTTVRFQSGEWYLLTS----TTIKENSLPESWVWDRV--E---------LQSNTAYYADQALAYFITPPP 632 Human astrovirus 1
Q96818   569 NFk-iRGATSEQNISFSEG-WYLMTN----TATFNPPAPPGWIWKNV--E---------LDNNTPYIVDQGMMHLIMSPP 631 Human astrovirus 7
Q9ICH9   568 NLk-iRPQTWQQTVNFQRGKWYLVTN----TAIRNGPPPSGWIWDNM--E---------LTNENIYYADQVLAHFINPPP 631 Human astrovirus 4
Q9IFX1   568 NLk-iRDQTYHTPLQFTQGKWYLLTS----TVMHDGPTSSGWVWMNQ--E---------LTNNIAYRVDPGMMYLITPPP 631 Human astrovirus 8
AFE84778 565 LMk-iRPQTYHTTVNFVQNNWYLLTS----TVLHTGSIPSGWVWMNQ--E---------LMNNENYIVDQGMKHLMTTPP 628 Human astrovirus 5
ADJ17721 566 NIk-iRSATRHTTVRFNQGSWYLLTS----TVLHTGPPVSGWLWMNQ--E---------LQNDQAYIIDQGIMHLITPPP 629 Human astrovirus 6
ABG00150 570 NLk-vRSDTTAQDVNFPVG-WYLMTN----TAIFNAPAPPGWIWQNV--E---------LLNDTAYLIDQGMMHLIMPPP 632 Human astrovirus 3
ACR54274 706 TTIAGAFWPDARVEEEEEPAVFNDPFGTG---------------PEPDLSEPSDEED--------VGDDDIEAGVESDTD 762 California sea lion...
O72163   628 QNVPIYYRMRTAMPTEVQQFEGVDERLVEdlvhelelsrrhagwAEEEHCDTFDAAEpppfegedVSDEETDTETESNED 707 Mamastrovirus 2
AEM37622 697 QAI--------TPVQPAALFYSADPFKTG---------------PEPEIGEPSDEED----------VAEVEEEVESAED 743 California sea lion...
AEM37631 695 NAV-------TSSLNATNLYTVGDPYRTG---------------PEPEIGEPSSEED-----------VAEGEEVESEED 741 California sea lion...
BAF91368 632 ESTQMCYEMLTSIPRSRAAGYGYESDN-------------------TEYLDAPDFADq------lREDIETDTHIETTED 686 Human astrovirus 1
ABO65208 635 VDSQILFEGSTTLPRISSPPDNSSGRYMG---------------SQQQDCDTSDDEDdce---teYVSEETETEDEEDED 696 Human astrovirus
Q14V18   633 VDSKILFDGSIVLPSTATLLTDTSGRATG---------------AQGADGESSDDEDdd-----aYVSEGTETEDEEDED 692 Human astrovirus 1
Q96818   632 VGTQLLFEMKTTVSGTRNVSHFDHDEN-----------------PSPVWCDALDAADv------wELPTETDTESEEDED 688 Human astrovirus 7
Q9ICH9   632 QDSKLYFEVHTTMPQSSMRNVGFDEDQ------------------TDNWQEPDEDLQ--------TSTEESDYETDSLED 685 Human astrovirus 4
Q9IFX1   632 AASQLYFELHTVLPQARS----EEPE---------------------TYVDAPLPEEp------pIEEEETDSDFESTED 680 Human astrovirus 8
AFE84778 629 VSSQLYFEMLTSLPQAMA----EQSDQSE---------------QAVTFYDSPGQAL--------FSAEETDSDFESTED 681 Human astrovirus 5
ADJ17721 630 VSSQIYFEMLTHVPQTRS---GGEDTGLG---------------MALGFSDDEYPTSq------vNDEEETEYETESDED 685 Human astrovirus 6
ABG00150 633 ANTQLLFEMRTSVTGSRSMISSEEPDTHG---------------PGDEWCDALDAGDs------rVLLEETDYEDEEDED 691 Human astrovirus 3
ACR54274 763 SLTDVTDTDEETEYESDAGDDEtVASRRLLLMNTMINQGIPEEQAARAAVRAFPT----AAQQVEKNTFLVALADGFSPR 838 California sea lion...
O72163   708 EDDEVDRFDLHDSSGSEPEDDD-VENDRVTLLNTLINQGIEITRAAKISKRAYPT----LAEKVRRGVYMDLLTTGVTPS 782 Mamastrovirus 2
AEM37622 744 SLTDVTDTDEETEYESDAGDDEtVASRRLLLMNTMINQGIPEEQAARAAVRAFPT----AAQQFEKNTFMVALADGFSPR 819 California sea lion...
AEM37631 742 SLTDVTDTDEETEYESDADDDEtVDSRRLLLMNTMINQGIPEEQAARAAVRAFPT----AAQQLEKNTFLVALADGFSPR 817 California sea lion...
BAF91368 687 EDDEADRFDIIDT--SDEEDEN--ETDRVTLLSTLVNQGMTMTRATRIARRAFPT----LTDRIKRGVYMDLLVSGASPN 758 Human astrovirus 1
ABO65208 697 EDDEADRFDLHSSYGSEPEDSD--ENNRVTLLSTLINQGMTVERATRITKRAFPT----CAEKTKRSVYMDLLASGASPS 770 Human astrovirus
Q14V18   693 EDDEADRFDLHSPYGSEPEDSD--ENNRVTLLSTLINQGMTVERATRITKRAFPT----CADKMKRSVYMDLLASGASPS 766 Human astrovirus 1
Q96818   689 EDDEADRFDLHSSYGSEPEDDD--ENNRVTLLSTLINQGMTVERATMITKRAFPT----CADKQKRSVHMDLLASGLSPG 762 Human astrovirus 7
Q9ICH9   686 ESDDEDTY-----------------TSRELVINTLVNQGISRDRATYIGMSAYPNvewgSGEKSTSQHISEIPSDDVGAE 748 Human astrovirus 4
Q9IFX1   681 ENDEVDRFDLHPS--SESDDDD-VENDRATLLSTLLNQGISVERATRITNGAFPT----RAARVRRSVYNDLLVSGLSPG 753 Human astrovirus 8
AFE84778 682 ENDEVDRFDLHLS--SESDDDD-VENNRVTLLSTLINQGMSVERATRITSNAFPT----RAARLRRSVYNDLLVSGLGPD 754 Human astrovirus 5
ADJ17721 686 ETDEVDRFDL--CYTSDSEDDI--ENNRVTLLSTLINQGMTVDRATMITNRAFPT----PNHRSRREQPNDLLTPSDCLV 757 Human astrovirus 6
ABG00150 692 EDDEADRFDLHSSYGSEPEDDD--ENNRVTLLSTLINQGMTVERATRITKRAFPT----SADKMKRSVYMDLLASGLSPG 765 Human astrovirus 3
ACR54274 839 QARADAKKAAAD-------------FSSSRGHAE 859 California sea lion astrovirus 2
O72163   783 VAWAEACRQARKasrkvnrsslpapTLESRGHAE 816 Mamastrovirus 2
AEM37622 820 QARADAKRAAAE-------------FSSSRGHAE 840 California sea lion astrovirus 6
AEM37631 818 QARADAKKAAAL-------------FSSSRGHAE 838 California sea lion astrovirus 9
BAF91368 759 SAWSHACEEARKaage-----inpcTSGSRGHAE 787 Human astrovirus 1
ABO65208 771 SAWSNACDEARNvgsn-----qltkLSGDRGHAE 799 Human astrovirus
Q14V18   767 SAWSNACDEARSlggn-----qlpkLSGDRGHAE 795 Human astrovirus 1
Q96818   763 NVWSHACEEARTmgtn-----hmpnVSGDRGHAE 791 Human astrovirus 7
Q9ICH9   749 AHCTCACERKQQs-----------lSQGSRGHAE 771 Human astrovirus 4
Q9IFX1   754 AAWSHACEQARRagdn-----hdlqLSGSRDHAE 782 Human astrovirus 8
AFE84778 755 AAWSHACDQARKvgdn-----hdlqVSGSRGHAE 783 Human astrovirus 5
ADJ17721 758 TARSHACDETCQ-------------FSGSRGHAE 778 Human astrovirus 6
ABG00150 766 NAWSHACEEARTmgin-----qvpnLSGDRGHAE 794 Human astrovirus 3
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