2OKU


Conserved Protein Domain Family
AcylCoA_dehyd_C

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pfam12186: AcylCoA_dehyd_C 
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Acyl-CoA dehydrogenase C terminal
This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam02770, pfam00441, pfam02771. There is a conserved ARRL sequence motif. The C terminal domain is an alpha helical domain. The flavin ring of Acyl-CoA dehydrogenase is buried in the crevice between the two alpha helical domains and the beta-sheet domain of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction of a neighboring subunit, composed of two C terminal domains.
Statistics
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PSSM-Id: 403423
View PSSM: pfam12186
Aligned: 44 rows
Threshold Bit Score: 138.467
Threshold Setting Gi: 524571757
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2OKU_A          10 TTgTYIARIReEYQQTEVKPELQPXKEALARXTDRAEALIAFVtEQKDQE---LLDFQARRLVEXTAHAVFGHLLXLAAN 86  Porphyromonas...
CDE41124        61 TTgTYLNQIN-AYAAEEYAPETSELKERLVKMTALYEEALKTVvDNKNTE---YTDFHARRLVEMAGHIIMGYLLLGDTT 136 Prevotella sp...
CCZ98060       452 TTgTFLAQMK-AYEAAERPAEFKFQLDKLIAMREEYERAIARVt-GGDSE---QIEFHARRLVEMTGHIVLSHLLLRQAA 526 Alistipes sp....
WP_004329122   452 TKgTFLEQIK-TYEAADYAPEMCAVKSKLTDLRVRFEEMVARV-ETLEKErsgYKDFHARRLVETAGHIIITYLLARQAG 529 Alistipes put...
AGY53639       452 TNgAYLAQIK-EYEKVELRPEFTQMKKTLIAMTDQYQQAVAIV-AGGDNE---FIDFHARRLVEMASHIVMSYLLIIDAQ 526 Bacteroidales...
CCY37704        74 TTgAYLAKIR-EYEAEDVAPEFATLKKTLVEMAAQYEQACALV-HGHDNT---YIDFHARRLVEMAGHIIMGWLLVLDAG 148 Alistipes sp....
CCZ09051       452 TTgQYAKYIHeVYEKMAIKPEHEYLRETLKCMTGQLETCTAKVaEAGNTE---YTDFHARRLVEIAGYTIIGYLLLQDAQ 528 Odoribacter s...
WP_009137147   452 TTgQYAKHIReVYEKAEIAPETEYLREQLKGMTEQLETATQTIgEVGNTE---YTDFHARRLVEMAGYTIIGYLLLLDAQ 528 Odoribacter l...
jgi:Palpr_1707 452 TTgNYLKIIR-DYDAQPIKPEFTSFRKRLQIMTNLYANAVARVtEAKNQE---YLDFQARRLVEMAGHIVMSYLLIIDAS 527 Paludibacter ...
CCY38017       452 TTgTYLNMMK-FYESQEISSDLIPLRNRLKTMTEIYEKIVTKVtETKDSE---YIDFHARRMVEMAGHIIMGHLLLLDTT 527 Tannerella sp...
2OKU_A          87 DD--DSFRQSAEVYLRYGQAEQEKIDSYVRAFRPEEL 121 Porphyromonas gingivalis W83
CDE41124       137 RN--EKFLKSANVYVNFGEAEVEKHHKFIMSFKPDGL 171 Prevotella sp. CAG:279
CCZ98060       527 ES--EEYRVPAEAYIKYAQAQNKAAAEFIANsccgdi 561 Alistipes sp. CAG:157
WP_004329122   530 ES--AEYIDSARIYCKLAESKVAEAYNYLMHSDVEDV 564 Alistipes putredinis
AGY53639       527 RD--KIFEDSAVIYTNKAKAWNDERYSYITDFAACDi 561 Bacteroidales bacterium CF
CCY37704       149 RC--ADFAKSARVFVGKAKSWNQERYDYIAGFSEEDL 183 Alistipes sp. CAG:831
CCZ09051       529 RS--EKFQKSAEIFINYGQAKVAAHAGFIHNFDPDKL 563 Odoribacter sp. CAG:788
WP_009137147   529 RA--PRFMKSAEIFIKYGQAKVCAHASFIANFNPDQL 563 Odoribacter laneus
jgi:Palpr_1707 528 RDteDLFRKSAEVYLNYGEVEVRRHAAFIKTFDVENV 564 Paludibacter propionicigenes WB4
CCY38017       528 RC--DSFRTSAEVYIHYGESEVTKNAKFIDQFDVEDL 562 Tannerella sp. CAG:118
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