Conserved Protein Domain Family
Arm-DNA-bind_2

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pfam12167: Arm-DNA-bind_2 
Arm DNA-binding domain
This domain is found at the N-terminus of various phage integrases. The domain binds to DNA.
Statistics
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PSSM-Id: 403406
View PSSM: pfam12167
Aligned: 21 rows
Threshold Bit Score: 81.5302
Threshold Setting Gi: 81770714
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q2L302           13 PRGVTIRelkDGPR-----VQIAFSYQGQQCRELLp--P--GKITKTFLEYAAGLRAEIRRKIADGTFSYKAYFPHSP 81  Bordetella avi...
Q3IEL8           11 PPGVVIR---YNSKgeatsFQLTFTYKSVLCREKV---P--FIPNKQGLKSAGFFLGQIKNEIAHDTFDYAKHFPKSN 80  Pseudoalteromo...
WP_011214456     14 PRGVSIRqweTGSA-----IRIIFSYRGVQCRETL---K--LEPTKANLKYAERLRGEIINAIALGTFNYADYFPDSK 81  Legionella
wugsc:CKO_01921   4 PTGVELH----NGK-----IRITFIYRGIRCREVLq--G--WVVNSSNIKKAGNLRAAIVSEIQLGKFDYADRFPESK 68  Citrobacter ko...
WP_015958275      5 PTGVEIR----GNR-----ICVWFMYKGKRCREVLk--G--WIVSPANIKKAGNLRAVITSEINMGEFDYGRRFPSSK 69  Klebsiella
P76056            5 PTGVEIR----GRY-----IRIWFMFRGKRCRETLk--G--WEITNSNIKKAGNLRALIVHEINSGEFEYLRRFPQSS 69  Escherichia co...
Q8ZQI9           16 PTGVEKH----GDK-----LRICFHYKGRRVRENL---G--VPDTPKNRKVAGELRASVCFAIKVGTFDYAAQFPDSP 79  Salmonella ent...
Q6LSL2            5 PTGVEIH----SGK-----LRIWFMFRGKRCRESL---Y--SPPTPRNIKIAFEKRTSVCHAIRLGTFDYLEWFPHST 68  Photobacterium...
jgi:Aave_2325     7 SGGVRPR----GNR-----IEVRFTWEGKQVSPTL---D--LRPTAANLKHAARLRATIVEEINQGKFRFAEHFPDYK 70  Acidovorax cit...
WP_011871714      5 TSGVEVR----ETS-----IRIIFTFQGKQRKETIcldNepLHPTPANIKYATRIAAEVRDKVRTGLFAYADYFPQSR 73  Herminiimonas ...
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